valr statistics

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Citations per year

Number of citations per year for the bioinformatics software tool valr

Tool usage distribution map

This map represents all the scientific publications referring to valr per scientific context
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Associated diseases


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valr specifications


Unique identifier OMICS_29444
Name valr
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages C++, R
License MIT License
Computer skills Advanced
Version 0.4.1
Stability Stable
IRanges, GenomicRanges, testthat, S4Vectors, ggplot2, rmarkdown, knitr, readr, stringr, tidyr, covr, devtools, R(≥3.1.2), rlang, microbenchmark, RMySQL, purrr, tibble, cowplot, DT, dbplyr, curl, broom, dplyr(≥0.7.0)
Maintained Yes




No version available



  • person_outline Jay Hesselberth

Publication for valr

valr citation


valr: Reproducible genome interval analysis in R

PMCID: 5506536
PMID: 28751969
DOI: 10.5256/f1000research.12975.r23916

[…] The valr package includes external datasets stored in the inst/extdata/ directory that were used in this manuscript. These datasets were obtained from the ENCODE Project or the UCSC genome browser . BED […]

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valr institution(s)
RNA Bioscience Initiative, University of Colorado School of Medicine, Aurora, CO, USA; Department of Biochemistry and Molecular Genetics, University of Colorado School of Medicine, Aurora, CO, USA; ComAnalyzeIT LLC, Fort Collins, CO, USA
valr funding source(s)
Supported by the RNA Bioscience Initiative, a grant from the National Institutes of Health (R35 GM119550), the Colorado Office of Economic Development and International Trade (CTGGI 2016-2096), the BioFrontiers Computing Core at the BioFrontiers Institute, University of Colorado at Boulder and the Intramural Research Program of the National Library of Medicine.

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