VAMPr specifications

Information


Unique identifier OMICS_34297
Name VAMPr
Alternative name VAriant Mapping and Prediction of antimicrobial resistance
Software type Application/Script
Interface Command line interface
Restrictions to use None
Input data A genome sequence.
Input format FASTA
Output data An alignment file.
Output format SAM
Operating system Unix/Linux
Programming languages Perl, Shell (Bash)
Computer skills Advanced
Stability Stable
Requirements
DIAMOND, R
Maintained Yes

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Versioning


No version available

Maintainer


  • person_outline David Greenberg

Publication for VAriant Mapping and Prediction of antimicrobial resistance

VAMPr institution(s)
Quantitative Biomedical Research Center, Department of Clinical Sciences, University of Texas Southwestern Medical Center, Dallas, TX, USA; Department of Internal Medicine, University of Texas Southwestern Medical Center, Dallas, TX, USA; Department of Microbiology, University of Texas Southwestern Medical Center, Dallas, TX, USA; Department of Statistical Science, Southern Methodist University, Dallas, TX, USA; Harold C. Simmons Cancer Center, University of Texas Southwestern Medical Center, Dallas, TX, USA; Department of Bioinformatics, University of Texas Southwestern Medical Center, Dallas, TX, USA; Department of Infectious Diseasesand Genomic Medicine, University of Texas MD Anderson Cancer Center, Houston, TX, USA; Department of Pediatrics, University of Texas Southwestern Medical Center, Dallas, TX, USA; Center for Genetics of Host Defense, University of Texas Southwestern Medical Center, Dallas, TX, USA
VAMPr funding source(s)
Supported by the National Institutes of Health [5P30CA142543] and the UTSW DocStars Award (DEG).

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