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Associated diseases

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Vanator specifications

Information


Unique identifier OMICS_01505
Name Vanator
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Perl
Computer skills Advanced
Stability Stable
Maintained Yes

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Publication for Vanator

Vanator in publications

 (2)
PMCID: 5654362
PMID: 29064471
DOI: 10.1038/sdata.2017.161

[…] extraction of unaligned reads was achieved using samtools 0.1.19 (ref. ) (http://samtools.sourceforge.net) and the next alignment commenced. bowtie, bwa and samtools were co-ordinated using the vanator pipeline (ref. )., vanator implements the following commands for bowtie and bwa:, bwa aln genome reads>sai_index bwa samse genome sai_index reads>sam bowtie -s -p 8 genome reads […]

PMCID: 5390268
PMID: 28406194
DOI: 10.1038/srep46578

[…] alignment, extraction of unaligned reads was achieved using samtools 0.1.19 (http://samtools.sourceforge.net) and the next alignment commenced. bowtie, bwa and samtools were co-ordinated using the vanator pipeline (https://sourceforge.net/projects/vanator-cvr). the resulting trimmed and cleaned reads are available from the sequence read archive (https://www.ncbi.nlm.nih.gov/sra/: biosamples […]


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Vanator institution(s)
Centre for Virus Research, MRC - University of Glasgow, Glasgow, UK

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