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Vanno specifications

Information


Unique identifier OMICS_09695
Name Vanno
Interface Web user interface
Restrictions to use None
Input format XLS,VCF,GVCF
Output data A page made up of three major blocks: the summary of input data, a cascade of filters and genetic alterations according to their gene targets and consequence types.
Computer skills Basic
Maintained No

Taxon


  • Primates
    • Homo sapiens

Maintainers


This tool is not available anymore.

Additional information


http://cgts.cgu.edu.tw/vanno/Tutorial/

Publication for Vanno

Vanno in publications

 (4)
PMCID: 4986225
PMID: 27527345
DOI: 10.1186/s12881-016-0322-2

[…] program. further advanced annotation was facilitated by uploading the exported vcf file from variant caller to the commercial software package ion reporter; the free online annotation software vanno and mutation taster. benign or tolerated amino acid changes were excluded after analysis using sorting intolerant from tolerant and polymorphism phenotyping. sanger sequencing was used […]

PMCID: 5122332
PMID: 27121310
DOI: 10.18632/oncotarget.8885

[…] of variants was facilitated by using the it variant caller software plugin (life technologies), and advanced annotation was performed by uploading an exported vcf file from variant caller to vanno (developed by the department of bioinformatics at chang gung university) []. initially, variants were selected by mutation type if they belonged to nonsynonymous or frameshift or stopgain […]

PMCID: 4361699
PMID: 25698683
DOI: 10.1177/0957154X14550136

[…] (3.3.1969): ‘da milano berengo mi telefona tutti i giorni a mi crea non poche difficoltà avanzando le sue rivendicazioni di estetica fotografica. temo che quando vedrà le prove stampate dirà che non vanno bene. dovrò fare qualche acrobazia per portare in salvo l’edizione tra le opposte esigenza sue e di giulio einaudi’ (‘berengo calls me up every day from milan and he is causing a lot […]

PMCID: 3941304
PMID: 24624108
DOI: 10.3389/fpsyg.2014.00176

[…] molto bella continuando la gita., c'è un rifugio al fondo della valle., [oggi andiamo a spasso per trento]., partiamo dalla stazione dei treni., poi andiamo nella piazza dove gli abitanti di trento vanno a spasso la sera., possiamo andare al bar a bere uno degli spritz migliori di trento., subito dopo il bar c'è un'altra chiesa, trento e' una città molto cattolica., [oggi andiamo a spasso per […]

Vanno institution(s)
Bioinformatics Core Laboratory, Chang Gung University, Taoyuan, Taiwan; Molecular Medicine Research Center, Chang Gung University, Taoyuan, Taiwan; Department of Biomedical Sciences, Chang Gung University, Taoyuan, Taiwan; Bioinformatics Division, Tri-I Biotech, Inc, Taipei, Taiwan; Molecular Regulation and Bioinformatics Laboratory, Chang Gung University, Taoyuan, Taiwan; Department of Industrial Engineering and Engineering Management, National Tsing Hua University, Hsinchu, Taiwan; Department of Molecular and Cellular Biology, Chang Gung University, Taoyuan, Taiwan
Vanno funding source(s)
Supported by grants from the Chang Gung Memorial Hospital (CMRPD190603); Ministry of Education, Taiwan (EMRPD1D0841 & EMRPD1D0761 & EMRPD1D0671) and Ministry of Science and Technology, Taiwan (MOST 103-2632-B-182-001).

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