VaPoR specifications

Information


Unique identifier OMICS_15675
Name VaPoR
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data A set of structural variants in either VCF or BED format, a series of long reads and/or sequence contigs in BAM format, the corresponding reference sequence
Output data The predicted SVs (>50bp) in various formats including VCF and BED
Biological technology Pacific Biosciences
Operating system Unix/Linux
Programming languages Python
Computer skills Advanced
Stability Stable
Requirements
SAMtools
Maintained Yes

Download


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Versioning


No version available

Documentation


Maintainer


  • person_outline Ryan Mills

Publication for VaPoR

VaPoR institution(s)
Department of Computational Medicine and Bioinformatics, University of Michigan Medical School, Ann Arbor, MI, USA; Department of Human Genetics, University of Michigan Medical School, Ann Arbor, MI, USA
VaPoR funding source(s)
This work was supported by the National Institutes of Health (R01HG007068) and by the Genome Science Training Program at the University of Michigan (5T32HG000040).

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