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VarB | A variation browsing and analysis tool for variants derived from NGS data

Visualizes (un)phased polymorphisms in a VCF file by sample, genetic region and quality. The basic inputs are a reference genome (fasta), variant (VCF) and annotation (gff) files. Complete genomes or user-specified regions (e.g. chromosome) may be inputted and viewed, with variant genotypes being colour coded. The variants displayed and their number will change depending on the quality and read depth filtering selected, allowing users to assess the robustness of the data and analysis.

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VarB forum

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VarB classification

VarB specifications

Unique identifier:
OMICS_00898
Interface:
Graphical user interface
Input data:
Reference genome, variants, annotation
Operating system:
Unix/Linux
License:
GNU General Public License version 2.0
Stability:
Stable
Software type:
Package/Module
Restrictions to use:
None
Input format:
FASTA, VCF, GFF
Programming languages:
C++
Computer skills:
Medium
Maintained:
Yes

VarB distribution

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VarB support

Maintainer

  • Taane G. Clark <>

Credits

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Publications

Institution(s)

Faculties of Epidemiology & Population Health and Infectious & Tropical Diseases, London School of Hygiene and Tropical Medicine, London, UK

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