VarEff statistics

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VarEff specifications

Information


Unique identifier OMICS_17930
Name VarEff
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
Computer skills Advanced
Version 1.2
Stability Stable
Maintained Yes

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Documentation


Maintainer


  • person_outline Claude Chevalet <>

Additional information


https://qgsp.jouy.inra.fr/archives/vareff/VarEffV1.2-SummaryManual.pdf

Publication for VarEff

VarEff in publication

PMCID: 3728969
PMID: 23919174
DOI: 10.1002/ece3.629

[…] and hardy–weinberg disequilibria were conducted with fstat 2.9.3.2. expected heterozygosity, he, (nei ) and observed heterozygosity, ho, were calculated with genetix 4.05.2 (belkhir et al. )., the vareff software, implemented as an r package (http://cran.r-project.org/web/packages/vareff), was used to infer effective size of populations and their recent evolution. the function theta was used […]


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VarEff institution(s)
Laboratoire de Genetique cellulaire, UMR 444 INRA/ENVT, Centre de Recherche INRA de Toulouse, Castanet Tolosan, France

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