Main logo
?
tutorial arrow
×
Submit new tools
Share tools covering the current topic. Provide easy-to-follow guidelines to improve their usability.
Share new tools with the community
Sign up for free to promote the availability of bioinformatics tools

Variant detection software tools | Shotgun metagenomic sequencing data analysis

Although many tools are available to study variation and its impact in single genomes, there is a lack of algorithms for finding such variation in metagenomes. This hampers the interpretation of metagenomics sequencing datasets, which are…
G T A T C G C T A
metaSNV
Desktop

metaSNV

Allows quantification of genomic variation. metaSNV uses a collection of…

Allows quantification of genomic variation. metaSNV uses a collection of microbial reference genomes, where each species is represented by a single representative genome to avoid redundancy. It…

G T A T C G C T A
MaryGold
Desktop

MaryGold

The package enables detection of sequence variation between metagenomic samples.

The package enables detection of sequence variation between metagenomic samples.

G T A T C G C T A
DupChecker
Desktop

DupChecker

Identifies duplicated samples by generating MD5 fingerprints for raw data.…

Identifies duplicated samples by generating MD5 fingerprints for raw data. DupChecker is a Bioconductor package that can efficiently check sample redundancy based on the raw data files of…

G T A T C G C T A
SPInDel
Desktop

SPInDel

A multifunctional workbench for species identification using insertion/deletion…

A multifunctional workbench for species identification using insertion/deletion variants.

Information

By using OMICtools you acknowledge that you have read and accepted the terms of the end user license agreement.