VEP specifications

Unique identifier:
OMICS_00139
Interface:
Web user interface, Application programming interface
Computer skills:
Basic
Maintained:
Yes
Name:
Variant Effect Predictor
Restrictions to use:
None
Stability:
Stable
  • Animals
    • Homo sapiens

VEP specifications

Unique identifier:
OMICS_00139
Software type:
Pipeline/Workflow
Restrictions to use:
None
Output data:
Summary file and a primary results file in tab-delimited.
Operating system:
Unix/Linux, Mac OS, Windows
Computer skills:
Advanced
Stability:
Stable
Name:
Variant Effect Predictor
Interface:
Command line interface
Input format:
VCF, variant identifiers and HGVS notations.
Output format:
HTML or text format and VCF, GVF, or JSON format.
Programming languages:
Perl
Version:
88.8
  • Animals
    • Homo sapiens

versioning

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VEP distribution

download

VEP support

Documentation

Maintainer

  • William McLaren <>
This tool is not maintained anymore.

Additional information

http://www.ensembl.org/info/docs/tools/vep/script/vep_download.html

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Credits

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Publications

Institution(s)

European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge, UK

Funding source(s)

Supported by the Wellcome Trust (grant numbers WT095908 and WT098051), the European Molecular Biology Laboratory, the European Union's Seventh Framework Programme (FP7/2007-2013) under grant agreement number 200754 (GEN2PHEN) and under grant agreement number 222664 (Quantomics) and from the European Union’s Horizon 2020 research and innovation programme under grant agreement number 634143 (MedBioinformatics).

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