1. Directory
  2. Genomics
  3. Genome annotation
  4. Repetitive DNA
Join community Sign in
By using OMICtools you acknowledge that you have read and accepted the terms of the end user license agreement.

A complete data analysis framework for overlapping pool designs, with novelties in all three major steps: variant pool and variant locus identification, variant allele frequency estimation and variant sample decoding. VIP is very flexible and can be combined with any pool design approaches and sequence mapping/alignment tools.

Software type:
Framework
Interface:
Command line interface
Restrictions to use:
None
Operating system:
Unix/Linux
Computer skills:
Advanced
Version:
VIP version 1.0
Stability:
Stable
View all reviews

0 user review

No review has been posted.

View all issues

0 issue

No open issue.

Maintainer

  • Jing Li <jingli at cwru.edu>

Institution(s)

Department of Electrical Engineering and Computer Science, Case Western Reserve University, Cleveland, OH 44106, USA

Funding source(s)

This research is supported by National Institutes of Health/National Library of Medicine grant LM008991.

  • (Wang et al., 2013) Rare variant discovery and calling by sequencing pooled samples with overlaps. Bioinformatics.
    PMID: 23104896

18 related tools