There is an immediate need for tools to both analyse and visualize in real-time single-nucleotide polymorphisms, insertions and deletions, and other structural variants from new sequence file formats. Source text: Preston et al., 2012.

Desktop app
Integrative Genomics… Integrative Genomics Viewer

IGV Integrative Genomics Viewer

A high-performance viewer that efficiently handles large heterogeneous data…

A high-performance viewer that efficiently handles large heterogeneous data sets, while providing a smooth and intuitive user experience at all levels of genome resolution. A key characteristic of…

Desktop app
G T A T C G C T A BamView BamView

BamView

An interactive Java application for visualizing the large amounts of data…

An interactive Java application for visualizing the large amounts of data stored for sequence reads which are aligned against a reference genome sequence. BamView supports the BAM (Binary…

Desktop app
Savant Savant

Savant

A next-generation genome browser designed for the latest generation of genome…

A next-generation genome browser designed for the latest generation of genome data.

Desktop app
G T A T C G C T A VarB VarB

VarB

Visualizes (un)phased polymorphisms in a VCF file by sample, genetic region and…

Visualizes (un)phased polymorphisms in a VCF file by sample, genetic region and quality. The basic inputs are a reference genome (fasta), variant (VCF) and annotation (gff) files. Complete genomes or…

Desktop app
G T A T C G C T A Highlander Highlander

Highlander

A Java software coupled to a local database to centralize all variant data and…

A Java software coupled to a local database to centralize all variant data and annotations from the lab, and to provide powerful filtering tools that are easily accessible to the biologist. Data can…

Desktop app
G T A T C G C T A RareVariantVis RareVariantVis

RareVariantVis

A tool for analysis of genome sequence data (including non-coding regions) for…

A tool for analysis of genome sequence data (including non-coding regions) for both germ line and somatic variants. It visualizes variants along their respective chromosomes, providing information…

BioCircos.js BioCircos.js

BioCircos.js

An interactive and lightweight JavaScript library especially for biological…

An interactive and lightweight JavaScript library especially for biological data interactive visualization. BioCircos.js is not a web application for end-users but a JavaScript library for…

Web app
G T A T C G C T A vcf.iobio.io vcf.iobio.io

vcf.iobio.io

Examine your variant file in seconds. vcf.iobio.io is a variant data inspector…

Examine your variant file in seconds. vcf.iobio.io is a variant data inspector tool that quickly samples vcf files and visualizes a series of metrics.

Desktop app
G T A T C G C T A CNView CNView

CNView

A software tool for normalized visualization, statistical scoring, and…

A software tool for normalized visualization, statistical scoring, and annotation of CNVs from population-scale whole-genome sequencing (WGS) datasets. CNView has six sequential steps: (1) matrix…

Desktop app
G T A T C G C T A Meander Meander

Meander

A tool to visualize read-depth and pair-end information as it originally comes…

A tool to visualize read-depth and pair-end information as it originally comes from NGS machines at various resolutions. Its main purpose is to provide intuitive visualizations for an easier…

Desktop app
G T A T C G C T A svviz svviz

svviz

A sequencing read visualizer for structural variants (SVs) that sorts and…

A sequencing read visualizer for structural variants (SVs) that sorts and displays only reads relevant to a candidate SV. svviz works by searching input bam(s) for potentially relevant reads,…

Desktop app
Web app
TASUKE TASUKE

TASUKE

A web application that visualizes large-scale resequencing data generated by…

A web application that visualizes large-scale resequencing data generated by next-generation sequencing technologies and is suitable for rapid data release to the public on the web. The variation and…

Desktop app
G T A T C G C T A SVAMP SVAMP

SVAMP

A standalone desktop application to visualise variants (SNPs and indels) and…

A standalone desktop application to visualise variants (SNPs and indels) and perform real-time analysis on selected regions of a genome on specific samples. SVAMP has some interesting features like…

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