There is an immediate need for tools to both analyse and visualize in real-time single-nucleotide polymorphisms, insertions and deletions, and other structural variants from new sequence file formats.Source text:(Preston et al., 2012) VarB: a variation browsing and analysis tool…
IGV
Desktop

IGV Integrative Genomics Viewer

A high-performance viewer that efficiently handles large heterogeneous data…

A high-performance viewer that efficiently handles large heterogeneous data sets, while providing a smooth and intuitive user experience at all levels of genome resolution. A key characteristic of…

G T A T C G C T A
BamView
Desktop

BamView

An interactive Java application for visualizing the large amounts of data…

An interactive Java application for visualizing the large amounts of data stored for sequence reads which are aligned against a reference genome sequence. BamView supports the BAM (Binary…

Savant
Desktop

Savant

A next-generation genome browser designed for the latest generation of genome…

A next-generation genome browser designed for the latest generation of genome data.

G T A T C G C T A
VarB
Desktop

VarB

Visualizes (un)phased polymorphisms in a VCF file by sample, genetic region and…

Visualizes (un)phased polymorphisms in a VCF file by sample, genetic region and quality. The basic inputs are a reference genome (fasta), variant (VCF) and annotation (gff) files. Complete genomes or…

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SVPV
Desktop

SVPV Structural Variant Prediction Viewer

Presents a visual summary of the most relevant features for structural variant…

Presents a visual summary of the most relevant features for structural variant (SV) prediction from whole genome sequencing (WGS) data. SVPV allows users to visualise SV together, along with…

G T A T C G C T A
Highlander
Desktop

Highlander

A Java software coupled to a local database to centralize all variant data and…

A Java software coupled to a local database to centralize all variant data and annotations from the lab, and to provide powerful filtering tools that are easily accessible to the biologist. Data can…

G T A T C G C T A
RareVariantVis
Desktop

RareVariantVis

A tool for analysis of genome sequence data (including non-coding regions) for…

A tool for analysis of genome sequence data (including non-coding regions) for both germ line and somatic variants. It visualizes variants along their respective chromosomes, providing information…

BioCircos.js
Library

BioCircos.js

An interactive and lightweight JavaScript library especially for biological…

An interactive and lightweight JavaScript library especially for biological data interactive visualization. BioCircos.js is not a web application for end-users but a JavaScript library for…

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GENESIS
Web

GENESIS

Provides a cloud-based system that allows users to directly process and analyze…

Provides a cloud-based system that allows users to directly process and analyze next-generation sequencing (NGS) data through a user-friendly graphical user interface (GUI). The first objectives of…

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vcf.iobio.io
Web

vcf.iobio.io

Examine your variant file in seconds. vcf.iobio.io is a variant data inspector…

Examine your variant file in seconds. vcf.iobio.io is a variant data inspector tool that quickly samples vcf files and visualizes a series of metrics.

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CNView
Desktop

CNView

A software tool for normalized visualization, statistical scoring, and…

A software tool for normalized visualization, statistical scoring, and annotation of CNVs from population-scale whole-genome sequencing (WGS) datasets. CNView has six sequential steps: (1) matrix…

G T A T C G C T A
Meander
Desktop

Meander

A tool to visualize read-depth and pair-end information as it originally comes…

A tool to visualize read-depth and pair-end information as it originally comes from NGS machines at various resolutions. Its main purpose is to provide intuitive visualizations for an easier…

G T A T C G C T A
svviz
Desktop

svviz

A sequencing read visualizer for structural variants (SVs) that sorts and…

A sequencing read visualizer for structural variants (SVs) that sorts and displays only reads relevant to a candidate SV. svviz works by searching input bam(s) for potentially relevant reads,…

TASUKE
Desktop
Web

TASUKE

A web application that visualizes large-scale resequencing data generated by…

A web application that visualizes large-scale resequencing data generated by next-generation sequencing technologies and is suitable for rapid data release to the public on the web. The variation and…

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SVAMP
Desktop

SVAMP

A standalone desktop application to visualise variants (SNPs and indels) and…

A standalone desktop application to visualise variants (SNPs and indels) and perform real-time analysis on selected regions of a genome on specific samples. SVAMP has some interesting features like…

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