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Variation Annotation GENeraTor VAGrENT

A suite of perl modules that compares genomic variations with reference genome annotations and generates the possible effects each variant may have on the transcripts it overlaps. VAGrENT evaluates each variation/transcript combination and describes the effects in the mRNA, CDS and protein sequence contexts. It provides details of the sequence and position of the change within the transcript/protein as well as Sequence Ontology terms to classify its consequences.

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VAGrENT classification

  • Animals
    • Homo sapiens

VAGrENT specifications

Software type:
Restrictions to use:
Programming languages:
Command line interface
Operating system:
Computer skills:
SAMtools, tabix, vcftools

VAGrENT distribution


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VAGrENT support


  • PICNIC Team <>

Link to literature

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