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HGVS / Human Genome Variation Society Sequence Variant Nomenclature
Recommendations for the description of sequence variants. HGVS-nomenclature is used to report and exchange information regarding variants found in DNA, RNA and protein sequences and serves as an international standard in DNA diagnostics. HGVS-nomenclature is authorised by the Human Genome Variation Society (HGVS), the Human Variome Project (HVP) and the HUman Genome Organization (HUGO). The HGVS recommendations are designed to be stable, meaningful, memorable, and unequivocal.
FROG / FingeRprinting Ontology of Genomic variations
A semantic approach is implemented to label variation data, based on its location, function and interactions. FROG has six levels to describe the variation annotation, namely, chromosome, DNA, RNA, protein, variations and interactions. Each level is a conceptual aggregation of logically connected attributes each of which comprises of various properties for the variant. For example, in chromosome level, one of the attributes is location of variation and which has two properties, allosomes or autosomes. Another attribute is variation kind which has four properties, namely, indel, deletion, insertion, substitution. FROG is a unique method designed for the purpose of labeling the entire variation data generated till date for efficient storage, search and analysis.
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