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  4. Repetitive DNA
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A tool for discovery of structural variation in one or more individuals simultaneously using high throughput technologies. VariationHunter is now capable of resolving incompatible SV calls through a conflict resolution mechanism that no longer requires post-processing heuristics.

Software type:
Package
Interface:
Command line interface
Restrictions to use:
None
Input format:
DIVET
Biological technology:
Illumina
Operating system:
Unix/Linux
Programming languages:
C
Computer skills:
Advanced
Stability:
Stable
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  • (Hormozdiari et al., 2010) Next-generation VariationHunter: combinatorial algorithms for transposon insertion discovery. Bioinformatics.
    PMID: 20529927

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