1. Directory
  2. High-throughput sequencing
  3. Whole-genome sequencing
  4. Germline SNP detection
Join community Sign in
By using OMICtools you acknowledge that you have read and accepted the terms of the end user license agreement.

A Hidden Markov Model for SNP and indel identification with AB-SOLiD color-space as well as regular letter-space reads.

Software type:
Package
Interface:
Command line interface
Restrictions to use:
None
Biological technology:
Life Technologies
Operating system:
Unix/Linux
Programming languages:
C
Computer skills:
Advanced
Stability:
Stable
View all reviews

0 user review

No review has been posted.

View all issues

0 issue

No open issue.

  • (Dalca et al., 2010) VARiD: a variation detection framework for color-space and letter-space platforms. Bioinformatics.
    PMID: 20529926
  • (Neuman et al., 2013) Analysis of insertion-deletion from deep-sequencing data: software evaluation for optimal detection. Briefings in bioinformatics.
    PMID: 22707752

59 related tools