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OMIC
02163

VARiD

A Hidden Markov Model for SNP and indel identification with AB-SOLiD color-space as well as regular letter-space reads.

Specifications

Software type:
Package
Interface:
Command line interface
Restrictions to use:
None
Biological technology:
Life Technologies
Operating system:
Unix/Linux
Programming languages:
C
Computer skills:
Advanced
Stability:
Stable
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Publications

  • (Dalca et al., 2010) VARiD: a variation detection framework for color-space and letter-space platforms. Bioinformatics.
    PMID: 20529926

Classification

Literature

  • (Neuman et al., 2013) Analysis of insertion-deletion from deep-sequencing data: software evaluation for optimal detection. Briefings in bioinformatics.
    PMID: 22707752

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