Variobox specifications

Information


Unique identifier OMICS_09723
Name Variobox
Software type Package/Module
Interface Graphical user interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages Java
Computer skills Medium
Version 1.4.4
Stability Stable
Maintained Yes

Taxon


  • Primates
    • Homo sapiens

Versioning


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Maintainer


  • person_outline Paulo Gaspar <>

Publication for Variobox

Variobox in publications

 (2)
PMCID: 5778434
PMID: 29379553
DOI: 10.5114/aoms.2018.72245

[…] (applied biosystems, foster city, ca, usa) as described earlier [, , ]. sequence analysis was carried out using dna sequencing analysis software v5.4 (applied biosystems, foster city, ca, usa) and variobox []. mafft (multiple sequence alignment and nj/upgma phylogeny) version 7 was used for the multiple sequence alignment of the klf1 gene sequences []. three-dimensional (3d) homology modeling […]

PMCID: 5648127
PMID: 29049312
DOI: 10.1371/journal.pone.0185270

[…] prove annotation error in α-globin gene from different analytic tools. the two sequences (hba2:c.95+2_95+6deltgagg and hba12) with variants were given as input sequence and carefully analysed using variobox v.1.4.6 [], mafft version 7 (multiple alignment program for amino acid or nucleotide sequences) [] and mutation surveyor v4.0.8 []. additionaly, mutalyzer 2.0.22 was used to identify […]


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Variobox institution(s)
DETI/IEETA, University of Aveiro, Campus Universitário de Santiago, Aveiro, Portugal; Centro de Genética Médica Dr. Jacinto Magalhães, Centro Hospitalar do Porto, E. P. E (CHP), Praça Pedro Nunes, Porto, Portugal; Department of Genetics, University of Leicester, University Road, Leicester, UK
Variobox funding source(s)
European FP7 project GEN2PHEN; Fundação para a Ciência e Tecnologia (FCT) (SFRH/BD/71063/2010); Santander Travel Award

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