VarMatch specifications

Unique identifier:
OMICS_14435
Interface:
Command line interface
Input format:
VCF
Programming languages:
C++, Python
Computer skills:
Advanced
Requirements:
GCC, matplotlib
Software type:
Package/Module
Restrictions to use:
None
Operating system:
Unix/Linux, Mac OS, Windows
License:
GNU General Public License version 3.0
Stability:
Stable
Maintained:
Yes

versioning

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No versioning.

VarMatch distribution

download

VarMatch support

Documentation

Maintainer

  • Chen Sun <>

forum

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Credits

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Publications

Institution(s)

Department of Computer Science and Engineering, The Pennsylvania State University, PA, USA; Department of Biochemistry and Molecular Biology, The Pennsylvania State University, PA, USA; Genome Sciences Institute at the Huck, The Pennsylvania State University, PA, USA

Funding source(s)

This work has been supported in part by NSF awards DBI-1356529, CCF-1439057, IIS-1453527, and IIS-1421908.

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It's especially useful to find high-quality variants by intersecting the results of different variant calling tools. For instance, you can predict variants using Freebayes and GATK, and then use VarMatch to find high-quality variants that are supported by both tools.

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