VarSeq protocols

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description
VarSeq computational protocol

VarSeq specifications

Information


Unique identifier OMICS_18804
Name VarSeq
Interface Web user interface
Restrictions to use License purchase required
Computer skills Basic
Stability Stable
Free trial Yes
Maintained Yes

Additional information


Access available upon request.

VarSeq IN pipelines

 (3)
2017
PMCID: 5701303
PMID: 28652255
DOI: 10.1101/mcs.a002014

[…] scores, and cycle and context covariates. variants were called with gatk haplotypecaller to generate genome variant call format (gvcf). variant filtering and annotation was done using golden helix varseq version 1.1 software (golden helix inc.; http://goldenhelix.com/products/varseq/). the gvcf of each sequenced family member is uploaded to varseq and organized by pedigree. variants […]

2017
PMCID: 5701303
PMID: 28652255
DOI: 10.1101/mcs.a002014

[…] to generate genome variant call format (gvcf). variant filtering and annotation was done using golden helix varseq version 1.1 software (golden helix inc.; http://goldenhelix.com/products/varseq/). the gvcf of each sequenced family member is uploaded to varseq and organized by pedigree. variants are filtered for gq > 20 and dp > 10. of the variants that pass the filter, […]

2017
PMCID: 5701303
PMID: 28652255
DOI: 10.1101/mcs.a002014

[…] filtering and annotation was done using golden helix varseq version 1.1 software (golden helix inc.; http://goldenhelix.com/products/varseq/). the gvcf of each sequenced family member is uploaded to varseq and organized by pedigree. variants are filtered for gq > 20 and dp > 10. of the variants that pass the filter, only those that are predicted to cause loss-of-function or missense […]

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