VASP pipeline

VASP specifications

Information


Unique identifier OMICS_08186
Name VASP
Alternative name Variant Analysis of Sequenced Pedigrees
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data Two input files are required: a pedigree (PED) file representing pedigree structure and a variant call format (VCF) file containing variant information.
Operating system Unix/Linux
Programming languages Perl
Computer skills Advanced
Stability Stable
Maintained Yes

Taxon


  • Primates
    • Homo sapiens

Versioning


Add your version

Documentation


Maintainer


  • person_outline Matthew A. Field <>

Publication for Variant Analysis of Sequenced Pedigrees

VASP IN pipelines

 (2)
2017
PMCID: 5736598
PMID: 29259341
DOI: 10.1038/s41598-017-18217-w

[…] usa, on the hiseq 2500 s or the kinghorn centre for clinical genomics, australia, on the illumina hiseq xtm ten platform using the truseq nano library preparation. data had been analysed using the variant analysis of sequenced pedigrees (vasp) analytical pipeline, developed specifically to detect disease causing variants in sequenced pedigrees32,33. the presence of the hoxb13 g84e variant […]

2017
PMCID: 5736598
PMID: 29259341
DOI: 10.1038/s41598-017-18217-w

[…] centre for clinical genomics, australia, on the illumina hiseq xtm ten platform using the truseq nano library preparation. data had been analysed using the variant analysis of sequenced pedigrees (vasp) analytical pipeline, developed specifically to detect disease causing variants in sequenced pedigrees32,33. the presence of the hoxb13 g84e variant was examined in the annotated variant list […]

VASP institution(s)
Department of Immunology, John Curtin School of Medical Research, Australian National University, Canberra City, Australia
VASP funding source(s)
This work was supported by National Health and Medical Research Council Australia Fellowship 585490, National Institutes of Health [grant number U19 AI100627] and Bioplatforms Australia.

VASP reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review VASP