VAT specifications

Information


Unique identifier OMICS_04075
Name VAT
Alternative name Variant Annotation Tool
Software type Framework/Library
Interface Command line interface
Restrictions to use None
Output format VCF
Operating system Unix/Linux
Programming languages C, PHP
Parallelization MapReduce
Computer skills Advanced
Version 2.0.1
Stability Stable
Requirements GNU Scientific Library, GD library, Tabix, BlatSuite, BIOS library
Source code URL https://s3.amazonaws.com/vat-releases/vat-2.0.1.tar.gz
High performance computing Yes
Maintained Yes

Taxon


  • Animals
    • Homo sapiens

Download


Versioning


Add your version

Maintainers


  • person_outline Mark Gerstein <>
  • person_outline Lukas Habegger <>

Publication for Variant Annotation Tool

VAT institution(s)
Program in Computational Biology and Bioinformatics, Yale University, New Haven, CT, USA; Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT, USA; Department of Computer Science, Yale University, New Haven, CT, USA; Department of Pathology and Laboratory Medicine, Weill Cornell Medical College, New York, NY, USA; Institute for Computational Biomedicine, Weill Cornell Medical College, New York, NY, USA; Department of Chemistry, Yale University, New Haven, CT, USA; Department of Genetics, Stanford University School of Medicine, Stanford, CA, USA
VAT funding source(s)
Supported by the National Institutes of Health.

VAT reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review VAT