Vaxrank statistics

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Citations per year

Number of citations per year for the bioinformatics software tool Vaxrank

Tool usage distribution map

This map represents all the scientific publications referring to Vaxrank per scientific context
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Vaxrank specifications


Unique identifier OMICS_18658
Name Vaxrank
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data One or more files containing somatic variants, aligned tumor RNA-seq reads, and the HLA alleles to be used for MHC binding prediction.
Input format VCF, MAF, JSON, BAM
Operating system Unix/Linux
Programming languages Python
License Apache License version 2.0
Computer skills Advanced
Stability Stable
Maintained Yes




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  • person_outline Alexander Rubinsteyn

Publication for Vaxrank


Vaxrank: A Computational Tool For Designing Personalized Cancer Vaccines.

2017 BioRxiv
DOI: 10.1101/142919
Alex Rubinsteyn
Alex Rubinsteyn
Alex Rubinsteyn
Alex Rubinsteyn

Vaxrank citation


Computational Pipeline for the PGV 001 Neoantigen Vaccine Trial

Front Immunol
PMCID: 5778604
PMID: 29403468
DOI: 10.3389/fimmu.2017.01807

[…] pidisco (). Epidisco is used to set up a local or cluster compute environment, install all relevant bioinformatics tools (external software such as GATK, as well as our own tools including Isovar and Vaxrank), and coordinate the execution of these different tools on the input data.Epidisco accelerates portions of the genomics pipeline on two levels. Independent computational tasks such as QC check […]

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Vaxrank institution(s)
Department of Genetics and Genomic Sciences at Icahn School of Medicine at Mount Sinai, New York, NY, USA; Department of Microbiology and Immunology, Medical University of South Carolina, Charleston, SC, USA
Vaxrank funding source(s)
Supported by the Icahn Institute and the Parker Institute for Cancer Immunotherapy.

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