VCF2Networks specifications

Information


Unique identifier OMICS_05975
Name VCF2Networks
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Python
Computer skills Advanced
Stability Stable
Maintained Yes

Versioning


No version available

Documentation


Maintainer


  • person_outline Giovanni Marco Dall'Olio

Publication for VCF2Networks

VCF2Networks citation

library_books

Human Genome Variation and the Concept of Genotype Networks

2014
PLoS One
PMCID: 4049842
PMID: 24911413
DOI: 10.1371/journal.pone.0099424

[…] Genotype Networks are computed using a customized version of Networks, a software produced by our group . VCF2Networks allows to parse a Variant Call Format (vcf) file , generate a genotype network from it, and calculate network properties. The igraph library and its python bindings are used to represent […]

VCF2Networks institution(s)
Department of Experimental and Health Sciences, Institut de Biologia Evolutiva (CSIC-Universitat Pompeu Fabra), Barcelona, Catalonia, Spain; Institute of Evolutionary Biology and Environmental Studies/Swiss Institute of Bioinformatics, University of Zurich, Zurich, Switzerland; SIB, CIG Quartier Sorge, Lausanne, Switzerland; The Santa Fe Institute, Santa Fe, NM, USA; Departament de Genetica i de Microbiologia, Grup de Biologia Evolutiva (GBE), Universitat Autonoma de Barcelona, Bellaterra, Barcelona, Spain

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