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vcflib

A quick and extremely permissive method to read and write VCF files. vcflib provides a variety of functions for VCF manipulation: comparison, format conversion, filtering and subsetting, annotation, samples, ordering, variant representation, genotype manipulation, interpretation and classification of variants. Piping provides a convenient method to interface with other libraries (vcf-tools, BedTools, GATK, htslib, bcftools, freebayes) which interface via VCF files, allowing the composition of an immense variety of processing functions.

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vcflib forum

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vcflib classification

vcflib specifications

Unique identifier:
OMICS_02112
Software type:
Package/Module
Restrictions to use:
None
Programming languages:
C++
Computer skills:
Advanced
Maintained:
Yes
Alternative name:
libvcflib
Interface:
Command line interface
Operating system:
Unix/Linux
License:
MIT License
Stability:
Stable

vcflib distribution

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vcflib support

Documentation

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