vcfsubsample specifications

Information


Unique identifier OMICS_17727
Name vcfsubsample
Software type Package/Module
Interface Command line interface
Input format VCF
Output format VCF
Operating system Unix/Linux, Mac OS, Windows
License MIT License
Computer skills Advanced
Stability Stable
Requirements
CMake, Htslib, Argp
Maintained Yes

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vcfsubsample citation

library_books

Gene co expression network connectivity is an important determinant of selective constraint

2017
PLoS Genet
PMCID: 5407845
PMID: 28406900
DOI: 10.1371/journal.pgen.1006402

[…] 3%). The actual subsampling was done by dropping samples recursively until the minor allele frequency fell within ±2 percentage points of the desired frequency. This was done using our custom program vcfsubsample (https://github.com/maehler/vcfsubsample). […]

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