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VDJFasta

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Bioinformatics Perl extension for the analysis of antibody variable domain repertoires.

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VDJFasta classification

VDJFasta specifications

Software type:: Package/Module
Restrictions to use:: None
Programming languages:: Perl
Computer skills:: Advanced
Maintained:: Yes

Interface:: Command line interface
Operating system:: Unix/Linux
License:: Academic Free License version 3.0
Stability:: Stable

Credits

Publications

Publications contributions

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(Glanville et al., 2009) Precise determination of the diversity of a combinatorial antibody library gives insight into the human immunoglobulin repertoire. Proc Natl Acad Sci U.
PMID: 19875695 DOI: 10.1073/pnas.0909775106

Institution(s)

Research Informatics, Rinat-Pfizer Inc, South San Francisco, CA, USA

Link to literature

Methodology

(Heather et al., 2017) High-throughput sequencing of the T-cell receptor repertoire: pitfalls and opportunities. Brief Bioinform.
PMID: 28077404

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