VDJSeq-Solver specifications

Information


Unique identifier OMICS_07982
Name VDJSeq-Solver
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data RNA-seq paired-end reads
Output data VDJ rearrangements, T/B-cell clones and their abundances
Biological technology Illumina
Operating system Unix/Linux
Programming languages Java, Perl, Shell (Bash)
Computer skills Advanced
Stability Stable
Requirements TopHat, BEDTools Bowtie, Blast, SHRiMP, Samtools
Maintained Yes

Versioning


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Maintainer


  • person_outline Giulia Paciello <>

Publication for VDJSeq-Solver

VDJSeq-Solver institution(s)
Department of Control and Computer Engineering, Politecnico di Torino, Torino, Italy
VDJSeq-Solver funding source(s)
The authors received no specific funding for this work.

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