VDJSeq-Solver specifications

Unique identifier:
OMICS_07982
Interface:
Command line interface
Input data:
RNA-seq paired-end reads
Biological technology:
Illumina
Programming languages:
Java, Perl, Shell (Bash)
Stability:
Stable
Maintained:
Yes
Software type:
Package/Module
Restrictions to use:
None
Output data:
VDJ rearrangements, T/B-cell clones and their abundances
Operating system:
Unix/Linux
Computer skills:
Advanced
Requirements:
TopHat, BEDTools Bowtie, Blast, SHRiMP, Samtools
  • Animals
  • Fungi
  • Plants
  • Protists

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VDJSeq-Solver support

Maintainer

  • Giulia Paciello <>

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Publications

Institution(s)

Department of Control and Computer Engineering, Politecnico di Torino, Torino, Italy

Funding source(s)

The authors received no specific funding for this work.

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