VDJServer statistics

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Citations per year

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Popular tool citations

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Associated diseases

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VDJServer specifications

Information


Unique identifier OMICS_13406
Name VDJServer
Interface Web user interface
Restrictions to use None
Programming languages C++, Java, Javascript, Python
Computer skills Basic
Version 0.11.0
Stability Stable
Maintained Yes

Taxon


  • Primates
    • Homo sapiens
  • Rodents
    • Mus musculus

Documentation


Publication for VDJServer

VDJServer in publications

 (3)
PMCID: 5191574
PMID: 27005435
DOI: 10.1038/ncomms11112

[…] number srp065626., the illumina ngs raw reads were processed using a multi-step pipeline. the pre-processing of the sequencing data was done using the vdjpipe ngs processing software (https://vdjserver.org/software, manuscript in preparation). briefly, sample ids were extracted from the external identifier (p5 and p7), umis were extracted from the first 10 bases of read 1, […]

PMCID: 4654805
PMID: 26589402
DOI: 10.1186/s13073-015-0243-2

[…] processing unit (gpu)-enabled methods can help relieve this bottleneck. these approaches require programming expertise, or specifically designed tools. some tools, such as imgt/highv-quest [] or vdjserver [], offer web-based front ends for some analysis steps, in which users can submit data to be analyzed on dedicated servers. for human studies, ethical issues with regards to patient […]

PMCID: 4622443
PMID: 25517297
DOI: 10.4161/19420862.2014.971627

[…] data. he has developed tools to rapidly perform cdr3 analysis, v-gene assignment, and clustering of related sequences. finally, lindsay cowell (ut southwestern medical center) will present vdjserver, a web portal for storing, analyzing, sharing and archiving immune repertoire data. she is also developing standards for data sharing and interoperability, and analysis pipelines to support […]


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VDJServer institution(s)
The University of Texas Southwestern Medical Center, Dallas, TX, USA; The Texas Advanced Computing Center, University of Texas, Austin, TX, USA; The J Craig Venter Institute, San Diego, CA, USA, The University of California, San Diego, CA, USA
VDJServer funding source(s)
Funded by a National Institute of Allergy and Infectious Diseases research grant (#1R01A1097403)

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