VDJsolver statistics

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Popular tool citations

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Associated diseases

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VDJsolver specifications

Information


Unique identifier OMICS_17948
Name VDJsolver
Interface Web user interface
Restrictions to use None
Input data A genome sequence.
Input format FASTA
Computer skills Basic
Version 1.0
Stability Stable
Maintained Yes

Maintainer


  • person_outline Torben Barington <>

Publication for VDJsolver

VDJsolver in publications

 (2)
PMCID: 5186763
PMID: 28082977
DOI: 10.3389/fimmu.2016.00637

[…] through its unit of information resources for research (urici)., 1http://nutrigroup-iats.org/., 2http://web.expasy.org/translate/., 3http://www.ebi.ac.uk/interpro/., 4http://www.cbs.dtu.dk/services/vdjsolver/., 5http://www.cbs.dtu.dk/services/netnglyc/., 6http://www.genome.jp/tools/clustalw/., 7http://prodata.swmed.edu/promals3d/promals3d.php., this work has been carried out with financial […]

PMCID: 4879468
PMID: 27957330
DOI: 10.1002/iid3.108

[…] were filtered and reads containing reliably vdj‐sequences were selected using a cluster analysis (pmid:25556246). the presence of v‐segment and number of shm in these reads were determined using vdjsolver (pmid:17005006) ., the method has been published in barington et al. : reads were qualified by the presence of primer and mid sequences and identical sequences (at least 1 forward and 1 […]


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VDJsolver institution(s)
Department of Clinical Immunology, Odense University Hospital, Odense, Denmark; Center for Biological Sequence Analysis, BioCentrum, Technical University of Denmark, Lyngby, Denmark
VDJsolver funding source(s)
Supported by grants from the Danish Medical Research Council (grant 22-01-0156), the Institute of Clinical Research, the University of Southern Denmark, the Toyota Foundation, and the Lands-Landsdelspuljen for the County of Funen.

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