VDJviz statistics

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Associated diseases

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VDJviz specifications

Information


Unique identifier OMICS_13530
Name VDJviz
Interface Web user interface
Restrictions to use Academic or non-commercial use
License Artistic License version 2.0
Computer skills Basic
Stability No
Requirements
Play Framework
Maintained No

Maintainer


This tool is not available anymore.

Information


Unique identifier OMICS_13530
Name VDJviz
Software type Package/Module
Interface Command line interface
Restrictions to use Academic or non-commercial use
Operating system Unix/Linux, Mac OS, Windows
Programming languages Java, Javascript, Scala
License Apache License version 2.0
Computer skills Advanced
Stability No
Requirements
Play Framework
Maintained No

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Publication for VDJviz

VDJviz in publication

PMCID: 5504616
PMID: 28693542
DOI: 10.1186/s12896-017-0379-9

[…] (https://omictools.com/rep-seq-category) []. recent developments include vdjtools [], which is capable of analysing outputs from the most common repertoire processing tools described above, and vdjviz [], a webtool offering similar features as vdjtools. another tool that provides tcr diversity measures and gene usage statistics computations is the r package “tcr”, which can be used […]


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VDJviz institution(s)
Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry RAS, Moscow, Russia; Pirogov Russian National Research Medical University, Moscow, Russia; Central European Institute of Technology, Masaryk University, Brno, Czech republic
VDJviz funding source(s)
This work was supported by the Russian Science Foundation project N° 14-14-00533 and partly by fellowship mol-a-dk RFBR grants 16-34-60179 and 16-34-60178.

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