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VDJviz

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G T A T C G C T A
VDJviz
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A web-based graphical user interface application that allows browsing and analyzing immune repertoire sequencing (RepSeq) data. VDJviz can be used to visualize results of MITCR, MIGEC, MIXCR and MIGMAP RepSeq processing software as well as popular IMGT/HighV-QUEST and ImmunoSEQ Analyzer services. VDJviz can be installed and used as a local server. Alternatively you can use an online demo version which currently has an upload limit of 25 datasets each having size at most 10000 clonotypes.

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VDJviz classification

VDJviz specifications

Interface:
Web user interface
License:
Artistic License version 2.0
Stability:
Stable
Maintained:
Yes
Restrictions to use:
Academic or non-commercial use
Computer skills:
Basic
Requirements:
Play Framework

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VDJviz versioning

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No versioning.

VDJviz classification

VDJviz specifications

Software type:
Package/Module
Restrictions to use:
Academic or non-commercial use
Programming languages:
Java, Javascript, Scala
Computer skills:
Advanced
Requirements:
Play Framework
Source code URL:
https://github.com/antigenomics/vdjviz.git
Interface:
Command line interface
Operating system:
Unix/Linux, Mac OS, Windows
License:
Apache License version 2.0
Stability:
Stable
Maintained:
Yes
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VDJviz support

Maintainer

  • Dmitriy V. Bagaev <>

Credits

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Publications

Institution(s)

Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry RAS, Moscow, Russia; Pirogov Russian National Research Medical University, Moscow, Russia; Central European Institute of Technology, Masaryk University, Brno, Czech republic

Funding source(s)

This work was supported by the Russian Science Foundation project N° 14-14-00533 and partly by fellowship mol-a-dk RFBR grants 16-34-60179 and 16-34-60178.

Link to literature

Methodology

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