Velvet-SC specifications

Information


Unique identifier OMICS_01504
Name Velvet-SC
Alternative name Velvet Single Cell
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data Sequence files
Input format fasta, fastq, fasta.gz, fastq.gz, sam, bam, eland, Gerald
Output data contigs, statistics, assembly information
Output format fasta, AFG, TXT
Operating system Unix/Linux
Computer skills Advanced
Version 0.7.62
Stability Stable
Requirements gcc
Maintained Yes

Taxon


  • Eubacteria
    • Escherichia coli
    • Staphylococcus aureus

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Velvet-SC article

Velvet-SC institution(s)
University of California, San Diego, Department of Computer Science, La Jolla, CA, USA; J. Craig Venter Institute, San Diego, CA, USA; University of California, San Diego, Department of Mathematics, La Jolla, CA, USA; J. Craig Venter Institute, Chinakville, MD, USA; Illumina Cambridge Ltd., Chesterford Research Park, Saffron Walden, UK
Velvet-SC funding source(s)
This work was partially supported by grants from the National Human Genome Research Institute (NIH-2R01 HG003647) and the Alfred P. Sloan Foundation (Sloan Foundation-2007-10-19), and by a grant from the National Institutes of Health (NIH grant 3P41RR024851-02S1).

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