VelvetOptimiser pipeline

VelvetOptimiser specifications


Unique identifier OMICS_03552
Name VelvetOptimiser
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
License GNU General Public License version 2.0
Computer skills Advanced
Stability Stable
Maintained Yes



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  • person_outline Simon Gladman <>

VelvetOptimiser IN pipeline

PMCID: 4434542
PMID: 25981746
DOI: 10.1186/s12864-015-1613-2

[…] then resuspended in h2o. genomic dna was sequenced on an illumina hi-seq in a multiplex run of 48 samples., de novo assembly of the illumina sequence data into contigs was carried out using velvetoptimiser (victorian bioinformatics consortium). the genome of atcc9714 was then optically mapped [51] (see below), establishing the order and relative orientations of all contigs >50┬ákb. […]

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