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Venn Diagram Plotter specifications

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Unique identifier OMICS_07030
Name Venn Diagram Plotter
Software type Package/Module
Interface Graphical user interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Medium
Stability Stable
Source code URL https://omics.pnl.gov/sites/default/files/software/VennDiagramPlotter_SourceAndSupportingDLLs_0.zip
Maintained Yes

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Venn Diagram Plotter citations

 (9)
library_books

Self reported health status, treatment decision and survival in asymptomatic and symptomatic patients with aortic stenosis in a Western Norway population undergoing conservative treatment: a cross sectional study with 18 months follow up

2017
BMJ Open
PMCID: 5629730
PMID: 28827255
DOI: 10.1136/bmjopen-2017-016489

[…] o imputing of missing data was performed.The statistical analyses were performed using SPSS for Windows V.22 (IBM), STATA/SE V.14.0 for Windows (February 2015), Matlab V.9.0 (The MathWorks, 2016) and Venn Diagram Plotter (http://omics.pnl.gov/software/venn-diagram-plotter). A two-sided p value ≤0.05 was considered statistically significant. To evaluate the clinical importance of differences in sel […]

library_books

Metaproteogenomics Reveals Taxonomic and Functional Changes between Cecal and Fecal Microbiota in Mouse

2017
Front Microbiol
PMCID: 5348496
PMID: 28352255
DOI: 10.3389/fmicb.2017.00391

[…] calculated according to established methods (). ClustVis was employed to generate PCA plots (). Cladograms were generated using GraPhlAn () and edited using Inkscape. Venn diagrams were plotted using Venn Diagram Plotter. […]

library_books

The impact of sequence database choice on metaproteomic results in gut microbiota studies

2016
Microbiome
PMCID: 5037606
PMID: 27671352
DOI: 10.1186/s40168-016-0196-8

[…] kscape.org), and histograms and dot plots were generated using GraphPad Prism (v.5.03), and Venn diagrams were generated using Venny (v.2.1.0; http://bioinfogp.cnb.csic.es/tools/venny/index.html) and Venn Diagram Plotter (v.1.5.5228; https://omics.pnl.gov/software/venn-diagram-plotter). Principal component analysis (with singular value decomposition and imputation of missing data) was carried out […]

library_books

A Modified SDS Based DNA Extraction Method for High Quality Environmental DNA from Seafloor Environments

2016
Front Microbiol
PMCID: 4917542
PMID: 27446026
DOI: 10.3389/fmicb.2016.00986

[…] Venn diagram, sequences were rarefied to even depth (Table , the number of least sequences within each group was the SCS sample) by random sampling using QIIME. The Venn diagram was created using the Venn Diagram Plotter software. […]

library_books

Characterization of chromatin accessibility with a transposome hypersensitive sites sequencing (THS seq) assay

2016
Genome Biol
PMCID: 4743176
PMID: 26846207
DOI: 10.1186/s13059-016-0882-7

[…] ome browser. Correlations were performed and graphed in R, and peak distribution graphs among other graphs were graphed with graphpad prism version 5.0. Proportional Venn diagrams were generated with Venn Diagram Plotter, (http://omics.pnl.gov/software/venn-diagram-plotter). Gene ontology analyses on significantly called peaks were performed with GREAT []. […]

call_split

Integration of Posttranscriptional Gene Networks into Metabolic Adaptation and Biofilm Maturation in Candida albicans

2015
PLoS Genet
PMCID: 4608769
PMID: 26474309
DOI: 10.1371/journal.pgen.1005590
call_split See protocol

[…] 1; using the tail-tools pipeline version 0.31 and nesoni version 0.117) http://rnasystems.erc.monash.edu/. Figures were generated in R and Illustrator. The Venn diagram in was generated using US DOE Venn Diagram Plotter software (http://omics.pnl.gov/software/venn-diagram-plotter), and we acknowledge PNNL and the OMICS.PNL.GOV website. For comparative analyses, the list of S. cerevisiae and C. al […]


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Venn Diagram Plotter funding source(s)
Supported by the NIH National Center for Research Resources (Grant RR018522), the W.R. Wiley Environmental Molecular Science Laboratory (a national scientific user facility sponsored by the U.S. Department of Energy's Office of Biological and Environmental Research and located at PNNL), and the National Institute of Allergy and Infectious Diseases (NIH/DHHS through interagency agreement Y1-AI-4894-01).

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