Unlock your biological data

?

Try: RNA sequencing CRISPR Genomic databases DESeq

1 - 28 of 28 results
filter_list Filters
build Technology
healing Disease
settings_input_component Operating System
tv Interface
computer Computer Skill
copyright License
1 - 28 of 28 results
BioVenn
star_border star_border star_border star_border star_border
star star star star star
(1)
forum (2)
Allows users to compare and visualize biological lists using Venn diagrams. BioVenn is a web application that generates circular area-proportional Venn diagrams from lists of biological identifiers. The software supports a wide range of identifiers from the most used biological databases (Affymetrix, COG, Ensembl, EntrezGene, Gene Ontology, InterPro, IPI, KEGG Pathway, KOG, PhyloPat [and RefSeq).
VennDIS / Venn Diagram Interactive Software
star_border star_border star_border star_border star_border
star star star star star
(1)
Produces highly customizable, publication quality Venn and Euler figures with a simple and intuitive graphical user interface (GUI). VennDIS is a platform-independent open source software written in Java. It supports several types of data input, such as simple lists, excel style tables, and pre-calculated values for overlaps and differences. Based on the user input, it analyzes the data and instantaneously offers the user suitable diagram options.
VENNY
star_border star_border star_border star_border star_border
star star star star star
(7)
forum (1)
Assists users in comparing lists. Venny provides an interactive application with Venn's diagrams, a figure that shows all possible logical relations between a finite collection of different sets. It permits to compare 2, 3 or 4 lists of data. It also offers an offline version that consists on a single standard html file. Finally, this method allows basic customization of user’s diagrams (line weight, font size and style).
InteractiVenn
star_border star_border star_border star_border star_border
star star star star star
(1)
Allows users to build and analyze Venn diagrams. InteractiVenn is a web-based tool that provides the ability to interactively visualize the effect of successive unions of up to six sets. The unions may be guided either by a binary tree or by a list. The software enables the analysis of combinations of sets of elements in part or in total, affording additional observations on the interactions between joined sets.
jvenn
star_border star_border star_border star_border star_border
star star star star star
(1)
A plug-in for the jQuery Javascript library. Jvenn hanldes up to six classes venn diagram and is easily integrable within web sites. It allows to display Edwards-Venn diagram and to provide the data from three different ways (lists/intersection counts/count lists). It provides statistic charts based on input data and exports the venn diagram to PNG and SVG, and exports lists to CSV. jvenn is based upon the venny tool.
MICRA / Microbial Identification and Characterization through Reads Analysis
Identifies and defines microbes via reads analysis. MICRA employs read mapping methods to make use of the increasing number of sequenced microbial genomes. The working consists in four parts: (1) pre-processing, (2) sequence identification, (3) identification of the closest reference genome and plasmids by the core part and (4) the post-analysis. This pipeline software is available as a download version and as a web interface.
OrthoVenn
A web platform for comparison and annotation of orthologous gene clusters among multiple species. OrthoVenn provides comprehensive coverage of vertebrates, metazoa, protists, fungi, plants and bacteria for identify orthologous gene clusters and supports user define species to upload customized protein sequences. It has an efficient and interactive graphic tool which provide a Venn diagram view for comparing two to six species protein sequences. The only thing user need to do is choosing species or upload protein sequences.
Venn diagram
star_border star_border star_border star_border star_border
star star star star star
(1)
With this tool you can calculate the intersection(s) of list of elements. It will generate a textual output indicating which elements are in each intersection or are unique to a certain list. If the number of lists is lower than 6 it will also produce a graphical output in the form of a venn diagram. You have the choice between symmetric (default) or non symmetric venn diagrams. Currently you are able to calculate the intersections of at maximum 30 lists. The graphical output is produced in SVG and PNG format.
VENNTURE
star_border star_border star_border star_border star_border
star star star star star
(1)
forum (2)
Allows simultaneous analysis of multiple large and complex pharmacological datasets. VENNTURE provides an interface for Edwards Venn diagram generation. The software facilitates the analysis of two to six sets of any length of dataset. It can be useful in the analysis of complex datasets in pharmacology, genomics, and bioinformatics research fields. Applied to complex sets of signaling data, VENNTURE can assist in the elucidation of the subtle effects that environmental perturbations can exert upon dose-dependent ligand actions.
CoVennTree / Comparative weighted Venn Tree
Simultaneously compares up to three multifarious datasets by aggregating and propagating information from the bottom to the top level and produces a graphical output in Cytoscape. The underlying concept of CoVennTree is to bring information from the leaf level up to the root node while maintaining the properties of the content of every dataset. With the introduction of weighted Venn structures, the amounts and relationships of data associated with different conditions can be correlated and simultaneously aggregated without losing relevant information. CoVennTree has been integrated into the Galaxy ToolShed and can be directly downloaded and integrated into the user instance.
eulerAPE
Draws area-proportional 3-Venn diagrams using ellipses. eulerAPE is an automated method that generates an exact diagram for most of the cases, and when it fails, the best diagram obtained through the hill climbing search is displayed, together with the inaccuracy values for each region. This method is based on the simple hill climbing optimization technique to draw an area-proportional diagram with ellipses in a time that is relatively fast and that maintains users’ attention.
venneuler
Provides a statistical basis for estimating area-proportional circular Venn and Euler diagrams on real data. Venneuler is an algorithm that produces (i) a circular Venn diagram when the data can be fit by a circular Venn diagram, (ii) an area-proportional circular Venn diagram when the data can be fit by an area proportional circular Venn diagram, (iii) an area-proportional circular Euler diagram when data can be fit by that model, and (iv) a statistically-justifiable approximation to an area proportional circular Venn or Euler diagram when the data can be fit approximately by one of these models.
VennMaster
Provides an alternative visualization approach with area-proportional Euler diagrams. VennMaster was integrated into the GoMiner software. That integration provides a seamless interface for user, and eliminates the overhead of performing file operations and managing external files. This application is implemented as a platform-independent open source Java application. It shows set relationships with semi-quantitative size information in a single diagram to support biological hypothesis formulation.
0 - 0 of 0 results
1 - 18 of 18 results
filter_list Filters
computer Job seeker
Disable 11
person Position
thumb_up Fields of Interest
public Country
language Programming Language
1 - 18 of 18 results