Venn diagram generation software tools | High-throughput sequencing data analysis
Venn diagrams are commonly used to display list comparison. In biology, they are widely used to show the differences between gene lists originating from different differential analyses, for instance. They thus allow the comparison between different experimental conditions or between different methods.
Assists users in plotting data. gplots is an R package that gathers a wide range of functionalities which permit (i) to calculate and plot locally summary function, (ii) to manipulate colors, (iii) to display Open Office style plots or (iv) to plot a matrix where each cell contains a dot whose size reflects the relative magnitude of the elements or Venn diagrams.
Assists users in comparing lists. Venny provides an interactive application with Venn's diagrams, a figure that shows all possible logical relations between a finite collection of different sets. It permits to compare 2, 3 or 4 lists of data. It also offers an offline version that consists on a single standard html file. Finally, this method allows basic customization of user’s diagrams (line weight, font size and style).
Allows users to compare and visualize biological lists using Venn diagrams. BioVenn is a web application that generates circular area-proportional Venn diagrams from lists of biological identifiers. The software supports a wide range of identifiers from the most used biological databases (Affymetrix, COG, Ensembl, EntrezGene, Gene Ontology, InterPro, IPI, KEGG Pathway, KOG, PhyloPat [and RefSeq).
Allows generation of highly customizable, high-resolution Venn diagrams with up to four sets and Euler diagrams of two or three sets. VennDiagram allows drawing Euler diagrams using circles and/or ellipses with two or three sets and generation of high resolution TIFF files that are standard in publications. The software can assist the promotion of the usage of automatically generated Venn diagrams within computational pipelines.
Offers Venn and Euler diagrams. Vennerable allows the display of area-weighted Venn diagrams and enables graphical control over the result. Users can choose among several geometries and this software features visualization for up to 9 different sets of diagrams.
A web platform for comparison and annotation of orthologous gene clusters among multiple species. OrthoVenn provides comprehensive coverage of vertebrates, metazoa, protists, fungi, plants and bacteria for identify orthologous gene clusters and supports user define species to upload customized protein sequences. It has an efficient and interactive graphic tool which provide a Venn diagram view for comparing two to six species protein sequences. The only thing user need to do is choosing species or upload protein sequences.
Allows users to build and analyze Venn diagrams. InteractiVenn is a web-based tool that provides the ability to interactively visualize the effect of successive unions of up to six sets. The unions may be guided either by a binary tree or by a list. The software enables the analysis of combinations of sets of elements in part or in total, affording additional observations on the interactions between joined sets.