VennDiagram specifications

Information


Unique identifier OMICS_05570
Name VennDiagram
Software type Package/Module
Interface Command line interface
Restrictions to use None
Output format TIFF
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License GNU General Public License version 2.0
Computer skills Advanced
Version 1.6.20
Stability Stable
Requirements grid, futile.logger
Maintained Yes

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Documentation


Maintainer


  • person_outline Paul Boutros <>

VennDiagram article

VennDiagram citations

 (3)
2016
PMCID: 4964045

[…] annotation, the number of gene models identified by each assembly method using the 180 m dataset from the two reference protein sets was visualized as quadruple venn diagrams, constructed by the venndiagram package in the r software environment (www.r-project.org). genome-guided assembly using the ae. aegypti reference genome was not included in this analysis because of the above-mentioned […]

2016
PMCID: 4873619

[…] mixomics package in r. this dataset (features/mass ions common in two or more donors) was scaled to unit variance (uv). global distribution of features and mass ions among donors was shown using venndiagram in r (venndiagram). radar plots were generated using excel. heatmaps were generated for each donor using the pheatmap package in r, and lipids were color-coded according to lipid group. […]

2014
PMCID: 4202336

[…] three, or four species vary in their general expression level in r using custom scripts and a kruskal–wallis test (supplementary table s2 and fig. s1, supplementary material online). the r package venndiagram (chen and boutros 2011) was used for visualization of transcripts with a shared expression in the investigated species. all r codes are available upon request., de transcripts of interest […]

VennDiagram institution(s)
Informatics and Biocomputing Platform, Ontario Institute for Cancer Research, MaRS Centre, South Tower, Toronto, ON, Canada
VennDiagram funding source(s)
Supported by the Ontario Institute for Cancer Research through funding provided by the Government of Ontario, and grant number MOP57903 from the Canadian Institutes of Health Research.

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