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Identification and application of exogenous dsRNA confers plant protection against Sclerotinia sclerotiorum and Botrytis cinerea
[…] /web/packages/gplots/index.html), terms were considered enriched at P < 0.001 with a blue-red color scale representing levels of statistical enrichment. Venn diagram visualization was performed using Venny 2.1 (http://bioinfogp.cnb.csic.es/tools/venny/). […]
Long non coding RNAs of switchgrass (Panicum virgatum L.) in multiple dehydration stresses
[…] Cuffdiff tool in the Cufflinks package (http://cole-trapnell-lab.github.io/cufflinks/) . Common and differentially expressed genes and lncRNAs in various samples were compared and identified using Venny 2.1 software (http://bioinfogp.cnb.csic.es/tools/venny/index.html).Dehydration stress memory lncRNAs were identified using methods published for Arabidopsis and maize [, ]. They were identified […]
Two independent proteomic approaches provide a comprehensive analysis of the synovial fluid proteome response to Autologous Chondrocyte Implantation
[…] rom this study (iTRAQ nanoLC-MS/MS [nLC-MS/MS]) and our previously published study assessing the same patient samples (LF LC-MS/MS ) were compared with one another. Venn diagrams were plotted using VENNY 2.1.0 software  to assess the overlap of differentially abundant proteins that were identified via the two approaches. […]
Telomerase regulation by the long non coding RNA H19 in human acute promyelocytic leukemia cells
[…] p. The statistically significant differential gene expression list was further trimmed by considering only genes with │fold change│ > 2 as biologically significant. Venn diagrams were generated using Venny tool (http://bioinfogp.cnb.csic.es/tools/venny/index.html). […]
A thin ice layer segregates two distinct fungal communities in Antarctic brines from Tarn Flat (Northern Victoria Land)
[…] icates the non-equality of variances (i.e. in the case of lithium and iron), the mean values (µTF) were compared using the Welch’s t-test at a confidence level of 95%.Venn diagram was generated using Venny, considering only OTUs present in at least two replicates.Representative OTUs were aligned via MUSCLE version 3.8.31, using default parameters. A phylogenetic tree was generated within QIIME usi […]
RNA Sequencing Reveals Unique Transcriptional Signatures of Running and Running Independent Environmental Enrichment in the Adult Mouse Dentate Gyrus
[…] genes with a log fold change ≥ 0.3 or ≤-0.3 were analyzed further. PANTHER was used to know in what main biological process categories the 380 significantly changed genes from the heatmap are found. Venny2.1.0 was used to generate the list of gene expression changes specific to each group (see Supplementary Materials). Gene lists were examined using Enrichr (; ) to investigate the Jaspar and Tran […]
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