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Protocols

VENNY specifications

Information


Unique identifier OMICS_05565
Name VENNY
Interface Web user interface
Restrictions to use None
Input data Some lists (up to four).
Computer skills Basic
Version 2.1.0
Stability Stable
Maintained Yes

Maintainer


VENNY citations

 (330)
library_books

Identification and application of exogenous dsRNA confers plant protection against Sclerotinia sclerotiorum and Botrytis cinerea

2018
Sci Rep
PMCID: 5943259
PMID: 29743510
DOI: 10.1038/s41598-018-25434-4

[…] /web/packages/gplots/index.html), terms were considered enriched at P < 0.001 with a blue-red color scale representing levels of statistical enrichment. Venn diagram visualization was performed using Venny 2.1 (http://bioinfogp.cnb.csic.es/tools/venny/). […]

library_books

Long non coding RNAs of switchgrass (Panicum virgatum L.) in multiple dehydration stresses

2018
BMC Plant Biol
PMCID: 5936019
PMID: 29728055
DOI: 10.1186/s12870-018-1288-3

[…] Cuffdiff tool in the Cufflinks package (http://cole-trapnell-lab.github.io/cufflinks/) []. Common and differentially expressed genes and lncRNAs in various samples were compared and identified using Venny 2.1 software (http://bioinfogp.cnb.csic.es/tools/venny/index.html).Dehydration stress memory lncRNAs were identified using methods published for Arabidopsis and maize [, ]. They were identified […]

library_books

Two independent proteomic approaches provide a comprehensive analysis of the synovial fluid proteome response to Autologous Chondrocyte Implantation

2018
PMCID: 5932832
PMID: 29720234
DOI: 10.1186/s13075-018-1573-4

[…] rom this study (iTRAQ nanoLC-MS/MS [nLC-MS/MS]) and our previously published study assessing the same patient samples (LF LC-MS/MS []) were compared with one another. Venn diagrams were plotted using VENNY 2.1.0 software [] to assess the overlap of differentially abundant proteins that were identified via the two approaches. […]

library_books

Telomerase regulation by the long non coding RNA H19 in human acute promyelocytic leukemia cells

2018
Mol Cancer
PMCID: 5923027
PMID: 29703210
DOI: 10.1186/s12943-018-0835-8

[…] p. The statistically significant differential gene expression list was further trimmed by considering only genes with │fold change│ > 2 as biologically significant. Venn diagrams were generated using Venny tool (http://bioinfogp.cnb.csic.es/tools/venny/index.html). […]

library_books

A thin ice layer segregates two distinct fungal communities in Antarctic brines from Tarn Flat (Northern Victoria Land)

2018
Sci Rep
PMCID: 5919928
PMID: 29700429
DOI: 10.1038/s41598-018-25079-3

[…] icates the non-equality of variances (i.e. in the case of lithium and iron), the mean values (µTF) were compared using the Welch’s t-test at a confidence level of 95%.Venn diagram was generated using Venny, considering only OTUs present in at least two replicates.Representative OTUs were aligned via MUSCLE version 3.8.31, using default parameters. A phylogenetic tree was generated within QIIME usi […]

call_split

RNA Sequencing Reveals Unique Transcriptional Signatures of Running and Running Independent Environmental Enrichment in the Adult Mouse Dentate Gyrus

2018
PMCID: 5908890
PMID: 29706867
DOI: 10.3389/fnmol.2018.00126
call_split See protocol

[…] genes with a log fold change ≥ 0.3 or ≤-0.3 were analyzed further. PANTHER was used to know in what main biological process categories the 380 significantly changed genes from the heatmap are found. Venny2.1.0 was used to generate the list of gene expression changes specific to each group (see Supplementary Materials). Gene lists were examined using Enrichr (; ) to investigate the Jaspar and Tran […]

Citations

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VENNY institution(s)
Computational Genomics Service, Centro Nacional de Biotecnología, (CNB-CSIC)

VENNY reviews

 (7)
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Dr Nick

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Web
Extremely easy to use web tool for generating up to a 4-way Venn diagram. Options for appearance modification are limited, but for anyone who doesn't know how to code, it's a darn good tool to get the job done fast.
Anonymous user #1066's avatar image No country

Anonymous user #1066

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Web
Very useful tool to obtain a Venn diagram from up to 4 lists