VENNY protocols

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VENNY computational protocol

VENNY specifications

Information


Unique identifier OMICS_05565
Name VENNY
Interface Web user interface
Restrictions to use None
Input data Some lists (up to four).
Computer skills Basic
Version 2.1.0
Stability Stable
Maintained Yes

Maintainer


VENNY IN pipelines

 (52)
2018
PMCID: 5767312
PMID: 29375595
DOI: 10.3389/fpls.2017.02212

[…] mapping entries of 5. the go data for the whole set of barley genes were retrieved from ensembl plants database and used as a background reference for the analysis. venn diagram was drawn using venny 2.1 (oliveros, 2015). the euclidean distance metric and ward's linkage method were applied in the hierarchical clustering analysis., one microgram of total rna was subjected to dnase treatment […]

2018
PMCID: 5774823
PMID: 29352289
DOI: 10.1371/journal.pone.0191623

[…] change| ≥ 1 and p < 0.05. student’s t-test (two-tailed) was used for data analysis this study. 8. the heat map was obtained using the software hemi [32], while the venn diagram was obtained using venny [33]. we applied kobas software to test the statistical enrichment of differential expression genes in kegg pathways., total rna was extracted from the hippocampus of rats in different groups […]

2017
PMCID: 5239818
PMID: 28144243
DOI: 10.3389/fpls.2016.01953

[…] tropical botanical garden for providing the high-performance computing and other research facilities., http://www.bioinformatics.babraham.ac.uk/projects/fastqc , http://bioinfogp.cnb.csic.es/tools/venny/index.html , https://github.com/cran/pheatmap , the supplementary material for this article can be found online at: […]

2017
PMCID: 5261807
PMID: 28068333
DOI: 10.1371/journal.pgen.1006541

[…] value as a measure of the enrichment of the binding sequence of a transcription factor in a list of candidate genes compared to a mock list of genes (fig 4c)., venn diagram was generated using venny 2.1–0 (http://bioinfogp.cnb.csic.es/tools/venny/index.html). a list of genes potentially regulated by ndt80 was obtained from chu et al [35]. the statistic representation of these genes […]

2017
PMCID: 5331639
PMID: 28245796
DOI: 10.1186/s12870-017-1005-7

[…] scanner 3000. the single array analysis, comparison analysis and molecule annotation system were performed by capitalbio., venn diagrams were made on the website http://bioinfogp.cnb.csic.es/tools/venny/. probe-set expression pattern clustering was performed using the multi experiment viewer software in the java environment (http://mev.tm4.org/). the go analysis was performed on the website […]

VENNY institution(s)
Computational Genomics Service, Centro Nacional de Biotecnología, (CNB-CSIC)

VENNY reviews

 (7)
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Dr Nick

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Extremely easy to use web tool for generating up to a 4-way Venn diagram. Options for appearance modification are limited, but for anyone who doesn't know how to code, it's a darn good tool to get the job done fast.
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Anonymous user #1066

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Very useful tool to obtain a Venn diagram from up to 4 lists