VENNY specifications

Information


Unique identifier OMICS_05565
Interface Web user interface
Restrictions to use None
Input data Some lists (up to four).
Computer skills Basic
Version 2.1.0
Stability Stable
Maintained Yes

Maintainer


VENNY citations

 (14)
2018
PMCID: 5844516

[…] a neighborhood radius of 5, minimum neighborhood quality of 15 and minimum central quality of 20, a minimum coverage of 3 and a 20% of minimum variant frequency., the snps were classified using venny 2.1 tool [47] as: 1) snps identified in genes located in common regions observed in all the backcrosses, and 2) snps segregating in the backcross where backcross-specific qtl regions […]

2017
PMCID: 5716676

[…] doxlipo and dppc doxlipo treatment showed fewer differentially expressed genes. the venn diagram was used to demonstrate the differentially expressed genes in common to different treatments using venny 2.1. of these, 11 upregulated and 16 downregulated genes were common to all treatments with a fold change of >1.5 (figure 5b). the heatmap of the differentially expressed genes was graphed […]

2017
PMCID: 5436693

[…] hochberg method. the threshold for significantly differential expression was used a set of corrected p value of 0.005 and log2(fold change) of 1. venn diagrams were created using an online tool, venny 2.1.0 (http://bioinfogp.cnb.csic.es/tools/venny/index.html) [22]. gene ontology (go) enrichment was performed by the goseq r package [23]. kyoto encyclopedia of genes and genomes (kegg) […]

2017
PMCID: 5441860

[…] and count value were calculated using express (mortazavi et al., 2008). differential expression analysis was performed using the deseq r package. p<0.05 was set as the threshold for significance. venny and gene ontology (go) analysis were performed by venny 2.1 (http://bioinfogp.cnb.csic.es/tools/venny/) and wego (web gene ontology annotation plot; […]

2016
PMCID: 5099522

[…] http://support.illumina.com/sequencing/sequencing_software/igenome.html , http://www.biocomputing.it/fidea , http://www-huber.embl.de/users/anders/htseq/ , http://bioinfogp.cnb.csic.es/tools/venny/index.html , http://www.informatics.jax.org/ , the supplementary material for this article can be found online at: […]

VENNY institution(s)
Computational Genomics Service, Centro Nacional de Biotecnología, (CNB-CSIC)

VENNY reviews

 (7)
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Dr Nick

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Web
Extremely easy to use web tool for generating up to a 4-way Venn diagram. Options for appearance modification are limited, but for anyone who doesn't know how to code, it's a darn good tool to get the job done fast.
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Sonia

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Web
Very useful tool to obtain a Venn diagram from up to 4 lists

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