VENNY statistics

To access cutting-edge analytics on consensus tools, life science contexts and associated fields, you will need to subscribe to our premium service.

Subscribe
info

Citations per year

Citations chart
info

Popular tool citations

chevron_left Venn diagram creation chevron_right
Popular tools chart
info

Tool usage distribution map

Tool usage distribution map
info

Associated diseases

Associated diseases

Protocols

To access compelling stats and trends, optimize your time and resources and pinpoint new correlations, you will need to subscribe to our premium service.

Subscribe

VENNY specifications

Information


Unique identifier OMICS_05565
Name VENNY
Interface Web user interface
Restrictions to use None
Input data Some lists (up to four).
Computer skills Basic
Version 2.1.0
Stability Stable
Maintained Yes

Maintainer


VENNY in pipelines

 (82)
2018
PMCID: 5877725
PMID: 29543748
DOI: 10.3390/ijms19030864

[…] analysis of the raw microarray data, all steroid treatments were compared against the vehicle (v, 0.1% dmso)., the lists of differentially expressed genes among conditions were then exported to venny 2.1.0 [], and then to the protein analysis through evolutionary relationships (panther) database [,,] (available at []) to determine the biological processes enrichment. with the database […]

2018
PMCID: 5845524
PMID: 29682564
DOI: 10.1155/2018/8518563

[…] isomirs in the specific mirna locus, and those abundantly expressed isomir species were specifically concerned in relevant analysis. distributions of different small rnas were estimated using venny []., although some circrnas were detected in both of the paired tumor and normal samples, some were expressed differentially in the tumor samples as compared to the normal samples based […]

2018
PMCID: 5898276
PMID: 29681917
DOI: 10.3389/fpls.2018.00458

[…] , http://www.venndiagrams.net/ , http://biit.cs.ut.ee/clustvis/ , http://bioconductor.org/packages/release/bioc/html/topgo.html , http://bioinfogp.cnb.csic.es/tools/venny/ , http://www.cytoscape.org/ , http://bioinformatics.psb.ugent.be/orcae/overview/tetur , the supplementary material for this article can be found online at: […]

2018
PMCID: 5771341
PMID: 29344280
DOI: 10.7150/jca.18188

[…] visualization and integrated discovery (david) v6.8 (https://david-d.ncifcrf.gov/) . we summarized the results from these programs as candidate targets of hsa-mir-378 and hsa-mir-1827 using venny v2.1 (http://bioinfogp.cnb.csic.es/tools/venny/) ., the 3'-utrs of rbx1 and crkl that contain the predicted hsa-mir-378 or hsa-mir-1827 binding site (wild type, wt) were amplified by pcr. wild […]

2018
PMCID: 5774823
PMID: 29352289
DOI: 10.1371/journal.pone.0191623

[…] change| ≥ 1 and p < 0.05. student’s t-test (two-tailed) was used for data analysis this study. 8. the heat map was obtained using the software hemi [], while the venn diagram was obtained using venny []. we applied kobas software to test the statistical enrichment of differential expression genes in kegg pathways., total rna was extracted from the hippocampus of rats in different groups […]


To access a full list of citations, you will need to upgrade to our premium service.

VENNY in publications

 (554)
PMCID: 5955936
PMID: 29769552
DOI: 10.1038/s41598-018-25658-4

[…] on the gcbi platform, we identified degs with a fold expression change >5 at cut off values q < 0.05 and p < 0.05. venn diagrams were used to compare the top 100 degs from 3 cohorts by venny (http://bioinfogp.cnb.csic.es/tools/venny/index.html). based on the degs, we further performed gene ontology (go) analysis in terms of biological functions and kyoto encyclopedia of genes […]

PMCID: 5943259
PMID: 29743510
DOI: 10.1038/s41598-018-25434-4

[…] terms were considered enriched at p < 0.001 with a blue-red color scale representing levels of statistical enrichment. venn diagram visualization was performed using venny 2.1 (http://bioinfogp.cnb.csic.es/tools/venny/)., targets for rnai were identified from a list of differentially upregulated genes shared between s. sclerotiorum grown on westar and zy821 […]

PMCID: 5941645
PMID: 29739397
DOI: 10.1186/s12920-018-0361-y

[…] was used to set the false discovery rate (fdr) at 0.05 []., all target genes of the 34 mirnas differentially expressed in t21 were compared with 110 genes differentially expressed in t21 using the venny tool (http://bioinfogp.cnb.csic.es/tools/venny_old/index.html). the genes showing a negative correlation with mirnas in terms of expression were selected as candidates for functional […]

PMCID: 5936019
PMID: 29728055
DOI: 10.1186/s12870-018-1288-3

[…] cuffdiff tool in the cufflinks package (http://cole-trapnell-lab.github.io/cufflinks/) []. common and differentially expressed genes and lncrnas in various samples were compared and identified using venny 2.1 software (http://bioinfogp.cnb.csic.es/tools/venny/index.html)., dehydration stress memory lncrnas were identified using methods published for arabidopsis and maize [, ]. […]

PMCID: 5932832
PMID: 29720234
DOI: 10.1186/s13075-018-1573-4

[…] this study (itraq nanolc-ms/ms [nlc-ms/ms]) and our previously published study assessing the same patient samples (lf lc-ms/ms []) were compared with one another. venn diagrams were plotted using venny 2.1.0 software [] to assess the overlap of differentially abundant proteins that were identified via the two approaches., the datasets generated using both proteomic approaches were combined. […]


To access a full list of publications, you will need to upgrade to our premium service.

VENNY institution(s)
Computational Genomics Service, Centro Nacional de Biotecnología, (CNB-CSIC)

VENNY reviews

 (7)
star_border star_border star_border star_border star_border
star star star star star

Dr Nick

star_border star_border star_border star_border star_border
star star star star star
Web
Extremely easy to use web tool for generating up to a 4-way Venn diagram. Options for appearance modification are limited, but for anyone who doesn't know how to code, it's a darn good tool to get the job done fast.
Anonymous user #1066's avatar image No country

Anonymous user #1066

star_border star_border star_border star_border star_border
star star star star star
Web
Very useful tool to obtain a Venn diagram from up to 4 lists