VERIFY3D specifications

Information


Unique identifier OMICS_13694
Name VERIFY3D
Interface Web user interface
Restrictions to use None
Input data A protein structure
Input format PDB
Output data A profile window plot
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline James Bowie <>

VERIFY3D articles

VERIFY3D citations

 (2)
2015
PMCID: 4337239

[…] with simulated annealing, performed by modeler. the quality of the best model was assessed by the determination of its energy (prosaii; sippl, 1993) and local sequence-structure correlation (verify3d; eisenberg et al., 1997). in the case of nad+-bound atsdh, the structure of the 18 amino acids at the n-terminus was predicted by jpred3 (cole et al., 2008) and then subjected to ab initio […]

2012
PMCID: 3573378

[…] protein data bank [figure 1]., the φ and ψ distribution value of the ramachandran plot of non-glycine and non-proline residues are shown in figure 2 and table 1., the profile score above zero in the verify3d graph correspond to the acceptable environment of the model [figure 3]. the global quality of the model for the target sequence was estimated by the qmean6 score based on linear combination […]

VERIFY3D institution(s)
Laboratory of Structural Biology and Molecular Medicine, University of California, CA, USA
VERIFY3D funding source(s)
This work was supported by National Institutes of Health and Department of Energy.

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