VERSE protocols

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VERSE specifications

Information


Unique identifier OMICS_12032
Name VERSE
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages C
License GNU General Public License version 3.0
Computer skills Advanced
Stability Stable
Maintained Yes

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Maintainer


  • person_outline Junhyong Kim <>

Publication for VERSE

VERSE in pipeline

2018
PMCID: 5809090
PMID: 29385124
DOI: 10.1371/journal.pgen.1007164

[…] reads were aligned to the danio rerio reference genome, build grcz10, and to spike-in transcript sequences using star (spliced transcripts alignment to a reference) [] aligner version 2.4.0. verse [] running in hierarchical assign mode was used to assign mapped reads to gene features. the average number of mapped reads per cell was 55 million. two of the 58 cells had less than 3 million […]


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VERSE institution(s)
Department of Biology, University of Pennsylvania, Philadelphia, PA, USA

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