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Vesiclepedia specifications

Information


Unique identifier OMICS_06564
Name Vesiclepedia
Restrictions to use None
Database management system MySQL
Community driven No
Data access File download, Browse
User data submission Allowed
Maintained Yes

Maintainer


  • person_outline Suresh Mathivanan

Publications for Vesiclepedia

Vesiclepedia citations

 (13)
library_books

The decade of exosomal long RNA species: an emerging cancer antagonist

2018
Mol Cancer
PMCID: 5861621
PMID: 29558960
DOI: 10.1186/s12943-018-0823-z

[…] With the recent exponential increase of exosomal research in the past decade, many exosome databases have been established (Table ). Vesiclepedia is one of these databases, where it features active involvement of EV researchers in creating a continuous and updated database. It not only includes molecular information on exosomes, bu […]

library_books

Circulating microRNAs and Bioinformatics Tools to Discover Novel Diagnostic Biomarkers of Pediatric Diseases

2017
Genes
PMCID: 5615367
PMID: 28925938
DOI: 10.3390/genes8090234

[…] the database through an online data submission form. The current version of miRandola (last update February 2017) is focused on human circulating miRNAs, long non-coding and circular RNAs, integrates Vesiclepedia miRNA data, and is linked to the NIH exrna.org research portal. Moreover, miRandola can help to retrieve specific information about miRNA complexed with exosomes taken from the ExoCarta d […]

library_books

Extracellular Vesicles in Brain Tumors and Neurodegenerative Diseases

2017
PMCID: 5583211
PMID: 28912682
DOI: 10.3389/fnmol.2017.00276

[…] amount of data on EVs which is exponentially increasing (Table ). In this perspective, the scientific community contributed to the development of databases. Exocharta (http://www.exocarta.org/), and Vesiclepedia (http://www.microvesicles.org/) are two of these databases with a compendium of lipids, RNA and proteins identified in different classes of EVs. Here, we extracted molecules identified in […]

library_books

Characterisation of extracellular vesicle subsets derived from brain endothelial cells and analysis of their protein cargo modulation after TNF exposure

2017
J Extracell Vesicles
PMCID: 5405560
PMID: 28473883
DOI: 10.1080/20013078.2017.1302705

[…] upplementary Table 1).Figure 3. Overall, MVs and EXOs shared 366 proteins, whereas 544 and 206 were uniquely found in MVs and EXOs, respectively. Almost all the proteins identified were annotated in Vesiclepedia [] (data not shown). Proteins commonly identified in both EV subsets included ribosomal proteins, annexins, integrins, heat shock proteins, G-proteins and Ras-related. The 544 proteins ex […]

library_books

Kalirin and CHD7: novel endothelial dysfunction indicators in circulating extracellular vesicles from hypertensive patients with albuminuria

2017
Oncotarget
PMCID: 5362505
PMID: 28152519
DOI: 10.18632/oncotarget.14948

[…] n from reporter ion intensities and statistical analysis were performed using QuiXoT software. All the significant proteins found in the differential analysis were searched against two EVs databases: Vesiclepedia and EVpedia in order to find previous evidence of their expression in EVs, both MVs and exosomes, at the protein or mRNA level. […]

library_books

Residual urinary extracellular vesicles in ultracentrifugation supernatants after hydrostatic filtration dialysis enrichment

2016
J Extracell Vesicles
PMCID: 5328348
PMID: 28326167
DOI: 10.1080/20013078.2016.1267896

[…] s reported in Supplemental . ) shows the Venn diagram of the protein identifications as per gene name of the “external” and “internal proteome” with respect to the set of genes-proteins listed in the Vesiclepedia and in the specific subset of the urinary vesicle database []. Out of 180 gene-protein entries, 166 were common to the UEV data set, 10 of which matched with vesicles originated from othe […]

Citations

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Vesiclepedia institution(s)
Department of Biochemistry and Genetics, La Trobe Institute for Molecular Science, La Trobe University, Bundoora, VIC, Australia; Laboratory of Experimental Cancer Research, Department of Radiation Oncology and Experimental Cancer Research, Ghent University, Ghent, Belgium
Vesiclepedia funding source(s)
Supported by Australian Research Council DP [DP170102312]; Australian Research Council FT [FT180100333] and NHMRC project grant [1122437].

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