ViaComplex statistics

To access cutting-edge analytics on consensus tools, life science contexts and associated fields, you will need to subscribe to our premium service.

Subscribe
info

Citations per year

Citations chart
info

Popular tool citations

chevron_left Gene regulatory network inference chevron_right
Popular tools chart
info

Tool usage distribution map

Tool usage distribution map
info

Associated diseases

Associated diseases

ViaComplex specifications

Information


Unique identifier OMICS_24371
Name ViaComplex
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages Fortran
Computer skills Advanced
Version 1.0
Stability Stable
Source code URL http://lief.if.ufrgs.br/pub/biosoftwares/viacomplex/source.htm
Maintained Yes

Download


Versioning


Add your version

Documentation


Maintainers


  • person_outline Mauro Castro <>
  • person_outline Rita de Almeida <>

Publication for ViaComplex

ViaComplex in publications

 (6)
PMCID: 5061082
PMID: 27292261
DOI: 10.1038/onc.2016.184

[…] hypoxic response (hyr) network was designed in string (http://string-db.org/) containing the selected pathways ()., gene set enrichment analysis (v2.1) was used to evaluate pathway enrichment (). viacomplex (v1.0) was used to generate representative landscape images of these results ( and )., publicly available mcf-7 chip-seq data (geo dataset gse55923) was analysed using macs2. sequence […]

PMCID: 4839732
PMID: 27100653
DOI: 10.1371/journal.pone.0153970

[…] handled by medusa software []. nodes colors include information on mms-induced changes in gene expression (microarray) and gene survival role in rnai screening. interactomes were further analyzed by viacomplex software [], which plots the gene expression (means of each replicates per gene) value over the network/interactome, and distributes the microarray signal through network objects (nodes […]

PMCID: 4548187
PMID: 26302899
DOI: 10.1038/srep13351

[…] expression responses to inducers, the obtained m(ifnγ + lps, tnfα) and m(il-4, il-13) gene networks were subsequently plotted as representative topological responses using landscape analysis with viacomplex® software. x and y-axis represent gene signature networks and the z-axis indicates an illustrative expression response to ifnγ + lps or il-4 inducers ()., to experimentally validate […]

PMCID: 3674721
PMID: 23766861
DOI: 10.1155/2013/791795

[…] information table s4). finally, to visualize the topological network properties of each node within medri network model, numeric values were projected in a 2d color representation by utilizing viacomplex software (http://lief.if.ufrgs.br/pub/biosoftwares/viacomplex/) []., the protein content of each sample was measured by lowry method []., results were expressed as the mean ± sem of three […]

PMCID: 3639264
PMID: 23637898
DOI: 10.1371/journal.pone.0061743

[…] was used and a mean value of expression for each gene was generated for both groups “a” and “b”. the mean value of expression was then overlaid in cpi-ppi-derived subnetworks with the software viacomplex 1.0 . by providing gene expression data and interactomic networks, the software viacomplex generates a landscape view of gene expression in a specific network., to predict the solubility […]


To access a full list of publications, you will need to upgrade to our premium service.

ViaComplex institution(s)
Unidade de Bioinformática, Departamento de Bioquimica, Universidade Federal do Rio Grande do Sul, Porto Alegre, Brazil; Instituto de Fisica, Universidade Federal do Rio Grande do Sul, Porto Alegre, Brazil; Nucleo de Bioinformatica, Departamento de Genética, Universidade Federal do Rio Grande do Sul, Porto Alegre, Brazil; Departamento de Fisica, Universidade Federal de Santa Maria, Santa Maria, Brazil
ViaComplex funding source(s)
Supported by the Brazilian Agencies FAPERGS, CAPES and CNPq.

ViaComplex reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review ViaComplex