VICMpred specifications

Information


Unique identifier OMICS_06625
Name VICMpred
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Publication for VICMpred

VICMpred in publications

 (8)
PMCID: 5796078
PMID: 29301342
DOI: 10.3390/ijms19010129

[…] protein (uniprot id: e9axt3)), (alba-like protein (uniprot id: e9b549)), and (leucine rich-like protein (uniprot id: e9atk7)), and were predicted to be parasite cytoplasmic proteins., the vicmpred and virulentpred servers were used to predict virulence factors among the 56 selected sequences. the correlation between the fold change in their expression content and scores obtained […]

PMCID: 5351547
PMID: 28344832
DOI: 10.4155/fsoa-2016-0066

[…] factors that are involved in severity of the infection, and are envisaged as targets for developing drugs against pathogen []. the virulence factor of nonhomologous proteins was identified by vicmpred and btxpred [,]. both methods for predicting virulence factor from protein sequence were based on svm., homology-modeling method, phyre2 [], was used for predicting the protein structure. […]

PMCID: 5056897
PMID: 27729842
DOI: 10.5808/GI.2016.14.3.125

[…] in their pathogenesis machinery. there are adhesins, exotoxins, endotoxins, and secretion systems, etc., that comprise the virulence moiety of pathogenic bacteria. we used virulentpred [] and vicmpred [] for the identification of virulence factors among the hps. both these tools are support vector machine (svm) based using 5-fold cross-validation processes to validate the results. […]

PMCID: 4403809
PMID: 25894582
DOI: 10.1371/journal.pone.0124177

[…] based on these tolls are listed in the ., identification of bacterial virulence factors can help to understand the mechanism of pathogenesis and search for potential therapeutic targets [,]. we used vicmpred [] and virulentpred [] for identification of hps which may be responsible for virulence in the t. pallidum ssp. pallidum. virulent hps from t. pallidum ssp. pallidum are listed in the ., […]

PMCID: 4569619
PMID: 28324524
DOI: 10.1007/s13205-014-0274-1

[…] (kanehisa ) and interproscan (quevillon et al. ). for the identification of motif sequence, we used meme suite (bailey et al. ). in addition, we also performed virulence factor prediction using vicmpred (saha and raghava ) and virulentpred (garg and gupta ), since virulence factors are considered as potential drug/vaccine targets (baron and coombes ). we also acknowledge the importance […]


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