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Vidjil specifications

Information


Unique identifier OMICS_04095
Name Vidjil
Interface Web user interface
Restrictions to use None
Programming languages C++, Javascript
License GNU General Public License version 2.0
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline Vidjil Team

Publication for Vidjil

Vidjil citations

 (2)
library_books

Vidjil: A Web Platform for Analysis of High Throughput Repertoire Sequencing

2016
PLoS One
PMCID: 5106020
PMID: 27835690
DOI: 10.1371/journal.pone.0166126

[…] tantly evolving. We regularly discuss with some of our users to see their needs and set future directions. A survey, conducted in September 2015, got answers from 17 labs around the world (results on vidjil.org/survey). A meeting in March 2016 for Vidjil users and developers gathered 35 people (vidjil.org/workshop-2016).We continue to improve the algorithm, notably to process more incomplete or un […]

library_books

Single cell TCRseq: paired recovery of entire T cell alpha and beta chain transcripts in T cell receptors from single cell RNAseq

2016
Genome Med
PMCID: 4962388
PMID: 27460926
DOI: 10.1186/s13073-016-0335-7

[…] eline is also provided in the “Methods” section.The method outlined offers a novel approach to the recovery of TCRs in scRNAseq data. It differs from currently available software such as MiTCR [] and Vidjil [] in that scTCRseq adopts an “outside-in” rather than an “inside-out” approach. Alternative software is designed primarily to analyze CDR3-containing reads generated from primer and PCR-based […]


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Vidjil institution(s)
Laboratoire d'Informatique Fondamentale de Lille (LIFL, UMR CNRS 8022, Université Lille 1) and Inria Lille - Cité scientifique, Villeneuve d'Ascq, France

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