VIGRA specifications


Unique identifier OMICS_10149
Alternative name Vision with Generic Algorithms
Software type Framework/Library
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages C++
License MIT License
Computer skills Advanced
Version 1.10.0
Stability Stable
Maintained Yes


No version available


  • person_outline Ullrich Köthe

VIGRA citation


Automated Detection of Synapses in Serial Section Transmission Electron Microscopy Image Stacks

PLoS One
PMCID: 3916342
PMID: 24516550
DOI: 10.1371/journal.pone.0087351

[…] orhoods of the objects were computed using anisotropic 3D distance transform and included points within 30 pixels in x and y and 1 pixel in z from the object. The feature accumulator framework of the vigra image processing library was used to compute the features efficiently. Given a labeled connected components volume, the framework allows to compute all pixel statistics for all connected compone […]

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