Vipie specifications

Unique identifier:
OMICS_18470
Restrictions to use:
Academic or non-commercial use
Input format:
FASTQ
Computer skills:
Basic
Maintained:
Yes
Interface:
Web user interface
Input data:
A set of files from virome metagenomics NGS.
Programming languages:
Javascript, Python, R
Stability:
Stable

Vipie specifications

Unique identifier:
OMICS_18470
Interface:
Command line interface
Input data:
A set of files from virome metagenomics NGS.
Operating system:
Unix/Linux
Computer skills:
Advanced
Maintained:
Yes
Software type:
Pipeline/Workflow
Restrictions to use:
Academic or non-commercial use
Input format:
FASTQ
Programming languages:
Javascript, Python, R
Stability:
Stable

versioning

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Vipie distribution

download

Vipie support

Documentation

Maintainers

  • Ondrej Cinek <>
  • Matti Nykter <>
  • Heikki Hyoty <>
  • Ondrej Cinek <>
  • Matti Nykter <>
  • Heikki Hyoty <>

Additional information

A registration is needed to access to tool. https://sourceforge.net/projects/vipie

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Credits

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Publications

Institution(s)

BioMediTech and Faculty of Medicine and Life Sciences, University of Tampere, Tampere, Finland; Department of Pediatrics, 2nd Faculty of Medicine, Charles University and University Hospital Motol, Praha, Czech Republic; School of Social Sciences, University of Tampere, Tampere, Finland; Fimlab Laboratories, Pirkanmaa Hospital District, Tampere, Finland

Funding source(s)

Supported by the University of Tampere’s BioMediTech Doctoral School, National technology Agency in Finland and Ministry of Health of the Czech Republic, AZV 15-31426A.

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