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  5. Pool-seq
  7. SNP detection
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OMIC
00081

vipR

A program to screen for sequence variants (SNPs, deletions) in sequence data generated by high-throughput-sequencing platforms.

Specifications

Software type:
Package
Interface:
Command line interface
Restrictions to use:
None
Operating system:
Unix/Linux, Mac OS, Windows
Programming languages:
Java, Python, R
License:
GNU General Public License version 2.0
Computer skills:
Advanced
Stability:
Stable
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Publications

  • (Altmann et al., 2011) vipR: variant identification in pooled DNA using R. Bioinformatics.
    PMID: 21685105

Classification

Literature

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