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ViPTree specifications


Unique identifier OMICS_17544
Name ViPTree
Interface Web user interface
Restrictions to use None
Input data Viral genome sequences
Input format FASTA
Computer skills Basic
Stability Stable
Maintained Yes


  • person_outline Susumu Goto <>

Publication for ViPTree

ViPTree in publication

PMCID: 5332604
PMID: 28261669
DOI: 10.1128/mSphere.00359-16

[…] sg cutoff values. for example, we observed a 1.6-fold evg-to-rvg gotu overrepresentation ratio at sg = 0.3 (). the proteomic tree and comparative genome maps are available at, genomic operational taxonomic unit (gotu) richness with six different thresholds. the evgs and rvgs were clustered together, and the gotu subsets of the evgs and rvgs […]

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ViPTree institution(s)
Institute for Chemical Research, Kyoto University, Uji, Japan; Graduate School of Agriculture, Kyoto University, Kitashirakawa-Oiwake, Sakyo-ku, Japan; SGI Japan, Shibuya-ku, Tokyo, Japan
ViPTree funding source(s)
This work was supported by The Canon Foundation (grant number 203143100025), Japan Society for the Promotion of Science (JSPS)/KAKENHI (grant numbers 26430184, 16H06429, 16K21723 and 16H06437), and the Collaborative Research Program of the Institute for Chemical Research, Kyoto University (grant number 2016-28).

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