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ViPTree specifications

Information


Unique identifier OMICS_17544
Name ViPTree
Interface Web user interface
Restrictions to use None
Input data Viral genome sequences
Input format FASTA
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline Susumu Goto <>

Publication for ViPTree

ViPTree in publication

PMCID: 5332604
PMID: 28261669
DOI: 10.1128/mSphere.00359-16

[…] sg cutoff values. for example, we observed a 1.6-fold evg-to-rvg gotu overrepresentation ratio at sg = 0.3 (). the proteomic tree and comparative genome maps are available at http://www.genome.jp/viptree/evg2017., genomic operational taxonomic unit (gotu) richness with six different thresholds. the evgs and rvgs were clustered together, and the gotu subsets of the evgs and rvgs […]


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ViPTree institution(s)
Institute for Chemical Research, Kyoto University, Uji, Japan; Graduate School of Agriculture, Kyoto University, Kitashirakawa-Oiwake, Sakyo-ku, Japan; SGI Japan, Shibuya-ku, Tokyo, Japan
ViPTree funding source(s)
This work was supported by The Canon Foundation (grant number 203143100025), Japan Society for the Promotion of Science (JSPS)/KAKENHI (grant numbers 26430184, 16H06429, 16K21723 and 16H06437), and the Collaborative Research Program of the Institute for Chemical Research, Kyoto University (grant number 2016-28).

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