Protocols

Vir-Mir db specifications

Information


Unique identifier OMICS_06349
Name Vir-Mir db
Restrictions to use None
Maintained Yes

Publication for Vir-Mir db

Vir-Mir db citations

 (2)
call_split

Epstein Barr virus encoded microRNA BART7 regulates radiation sensitivity of nasopharyngeal carcinoma

2017
Oncotarget
PMCID: 5386763
PMID: 28423621
DOI: 10.18632/oncotarget.15526
call_split See protocol

[…] SE15047. Raw microarray data of C666-1 were obtained from GSE34573. All the microarray data were normalized and analyzed using Gene Expression Commons []. Targets of ebv-miR-BART7 was predicted using Vir-Mir db []. The minimum free energy (mfe) of the miRNA/mRNA duplex was calculated and a lower mfe indicated greater stability of the miRNA/mRNA duplex. […]

library_books

Virus versus Host Plant MicroRNAs: Who Determines the Outcome of the Interaction?

2014
PLoS One
PMCID: 4045720
PMID: 24896088
DOI: 10.1371/journal.pone.0098263

[…] stingly no similar hairpins could be found. The secondary structures of 9 real pre-miRNA hairpin sequences predicted by RNAShapes () confirmed the data obtained by MiPred (Table S3 in ).Searching the Vir-Mir db for virus hairpins, only 3 deposited EACMV sequences were retrieved. One of the EACMV sequences (ID 18042) predicted from [Genbank: NC-004674.1] was similar to the hairpin EACMV-UG 3 foun […]

Vir-Mir db institution(s)
Institute of BioMedical Informatics, National Yang-Ming University, Taipei, Taiwan, China

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