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Viral population reconstruction software tools | Pool sequencing data analysis

Viral population reconstruction software tools | Pool sequencing data analysis

Viral haplotype reconstruction from a set of observed reads is one of the most challenging problems in bioinformatics today. Next-generation sequencing technologies enable us to detect single-nucleotide polymorphisms (SNPs) of haplotypes-even if the haplotypes appear at low frequencies.

Source text:
(Schirmer et al., 2014) Benchmarking of viral haplotype reconstruction programmes: an overview of the capacities and limitations of currently available programmes. Brief Bioinform.

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