VIRALpro specifications

Information


Unique identifier OMICS_11747
Software type Package/Module
Interface Command line interface
Restrictions to use Academic or non-commercial use
Input data Sequence of amino acids
Input format FASTA
Output data The scores associated with each sequence in the fasta file provided in input. A positive score indicates a positive prediction for the corresponding predictor (capsid or tail). A negative score means 'not a capsid sequence' or 'not a tail sequence'. The score itself is the distance to the decision boundary of the SVM and can be used for ranking purposes.
Output format csv
Operating system Unix/Linux
Programming languages R
Computer skills Advanced
Version 1.0
Stability Stable
Requirements HMMER, SCRATCH-1D
Maintained Yes

Taxon


  • Viruses

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Documentation


Maintainer


  • person_outline Clovis Galiez <>

Information


Unique identifier OMICS_11747
Interface Web user interface
Restrictions to use Academic or non-commercial use
Input data Sequence of amino acids
Input format Bare sequence
Output data Prediction if the input protein sequence is a capsid sequence or a tail sequence (YES/NO for each).
Output format Text
Computer skills Basic
Stability Stable
Maintained Yes

Taxon


  • Viruses

Documentation


Maintainer


  • person_outline Clovis Galiez <>

VIRALpro article

VIRALpro institution(s)
INRIA, Campus De Beaulieu, Rennes, France; Department of Computer Science and Institute for Genomics and Bioinformatics, University of California, Irvine, CA, USA

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