ViReMa specifications
Information
| Unique identifier | OMICS_00225 |
|---|---|
| Name | ViReMa |
| Alternative name | Viral Recombination Mapper |
| Software type | Package/Module |
| Interface | Command line interface |
| Restrictions to use | None |
| Operating system | Unix/Linux |
| Programming languages | Python |
| License | MIT License |
| Computer skills | Advanced |
| Stability | Stable |
| Maintained | Yes |
Versioning
No version available
Maintainer
- person_outline Andrew Routh
Publication for Viral Recombination Mapper
2014 Nucleic Acids Res
PMCID: 3902915
PMID: 24137010
DOI: 10.1093/nar/gkt916
ViReMa citation
library_books
Parallel ClickSeq and Nanopore sequencing elucidates the rapid evolution of defective interfering RNAs in Flock House virus
2017
PLoS Pathog
PMCID: 5435362
PMID: 28475646
DOI: 10.1371/journal.ppat.1006365
[…] rst to the FHV genome (NC_004414 and NC_004146) and next to host D. melanogaster genome (fb5_22). The remaining unmapped reads were processed to identify recombination events using the python script ‘ViReMa’ (Viral Recombination Mapper)[] (command line parameters:--N 1 --X 5 --Seed 25 --Host_Seed 30 --Defuzz 0 --MicroInDel 5). The frequency of a specific recombination event is approximated by divi […]
ViReMa institution(s)
Department of Integrative Structural and Computational Biology, The Scripps Research Institute, La Jolla, CA, USA
ViReMa funding source(s)
Supported by a European Molecular Biology Organization Long-Term Fellowship.
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